pycom16g00230

Thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
128288 .. 130341
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGTCCTACTTGCTACCGCACCTGCACTCGGGGTGGTCCGTCGACCAGGCCATTCTTGCCGAGGAAGAGCGCGTCGTCATCATCCGATTCGGCCATGACTGGGATGACACTTGCATGCAGACCTTTCTGAGCGCGAGAGAAAAAGCTTGGGAGAGAGTGAAGGGAAGAAGGTCGACGAAAAACGATGTCGTATCTGCTGCCGCACCTCCACTCAGGATGGGCCGTCGATCAGTCCTAATCCTCGCCGAGGAGGAGCGTCTTGTCCTCATCCGATTCGGCCACGATTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTGGCTTCTGTTGCTGAGACAATAAAAAACTTTGCTGTGATTTACCTCGTGGACATCACGGAGGTTCCTGATTTCAACACAATGTATGAACTCTACGATCCATCTACGGTCATGTTCTTTTTCAGAAACAAGCACATTATGATTGATCTTGGCACGGGGAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAAGAGTTCATTGACATTGTTGAGACAGTGTACCGCGGGGCAAGGAAGGGACGCGGTCTGGTCATTGCTCCCAAGGATTACTCCACCAAGTACCGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DIM1

Protein Analysis

205

Amino Acids

23.73

Weight (kDa)

5.98

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIM1 PF02966 4 - 41 9.6e-13 Mitosis protein DIM1
DIM1 PF02966 80 - 198 3.7e-60 Mitosis protein DIM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 30
AccI GTMKAC 2 cut(s) 42, 173
AccII CGCG 4 cut(s) 72, 134, 549, 567
AciI CCGC 6 cut(s) 17, 201, 547, 549, 567, 607
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 2 cut(s) 91, 277
AfaI GTAC 2 cut(s) 545, 605
AfiI CCNNNNNNNGG 4 cut(s) 28, 100, 247, 286
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 3 cut(s) 287, 329, 530
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 4 cut(s) 48, 91, 220, 277
ApeKI GCWGC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 72, 134
AspS9I GGNCC 2 cut(s) 36, 220
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 502
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 184
BccI CCATC 3 cut(s) 211, 301, 427
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 3 cut(s) 287, 329, 530
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 2 cut(s) 198, 201
BlsI GCNGC 2 cut(s) 199, 202
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 36, 220
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 2 cut(s) 109, 505
BmuI ACTGGG 2 cut(s) 109, 505
BpuEI CTTGAG 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 4 cut(s) 60, 246, 547, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 100, 247, 286
Bse1I ACTGG 2 cut(s) 104, 500
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 4 cut(s) 60, 246, 547, 585
BseGI GGATG 6 cut(s) 81, 109, 222, 267, 295, 316
BseLI CCNNNNNNNGG 4 cut(s) 28, 100, 247, 286
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 3 cut(s) 119, 226, 324
BseNI ACTGG 2 cut(s) 104, 500
BseRI GAGGAG 2 cut(s) 263, 266
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 8
Bsh1236I CGCG 4 cut(s) 72, 134, 549, 567
BshFI GGCC 4 cut(s) 50, 93, 222, 279
BsiHKCI CYCGRG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 4 cut(s) 28, 100, 247, 286
BsmAI GTCTC 3 cut(s) 287, 329, 530
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 4 cut(s) 50, 93, 222, 279
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 4 cut(s) 227, 415, 463, 489
BspACI CCGC 6 cut(s) 17, 201, 547, 549, 567, 607
BspANI GGCC 4 cut(s) 50, 93, 222, 279
BspCNI CTCAG 3 cut(s) 120, 225, 325
BspFNI CGCG 4 cut(s) 72, 134, 549, 567
BspLI GGNNCC 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 410
BspQI GCTCTTC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 2 cut(s) 104, 500
BssECI CCNNGG 4 cut(s) 60, 246, 547, 585
BssMI GATC 4 cut(s) 227, 415, 463, 489
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 427, 541
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 116, 321
BstDEI CTNAG 3 cut(s) 128, 212, 333
BstDSI CCRYGG 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 6 cut(s) 81, 109, 222, 267, 295, 316
BstFNI CGCG 4 cut(s) 72, 134, 549, 567
BstHHI GCGC 2 cut(s) 72, 134
BstKTI GATC 4 cut(s) 230, 418, 466, 492
BstMAI GTCTC 3 cut(s) 287, 329, 530
BstMBI GATC 4 cut(s) 227, 415, 463, 489
BstMWI GCNNNNNNNGC 2 cut(s) 56, 329
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 4 cut(s) 72, 134, 549, 567
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 4 cut(s) 50, 93, 222, 279
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 6 cut(s) 81, 109, 222, 267, 295, 316
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 116, 321
CfoI GCGC 2 cut(s) 72, 134
Cfr13I GGNCC 2 cut(s) 36, 220
Cfr42I CCGCGG 1 cut(s) 550
CseI GACGC 3 cut(s) 61, 245, 573
Csp6I GTAC 2 cut(s) 544, 604
CviAII CATG 3 cut(s) 95, 115, 430
CviJI RGCY 7 cut(s) 50, 93, 146, 222, 279, 323, 500
CviKI_1 RGCY 7 cut(s) 50, 93, 146, 222, 279, 323, 500
CviQI GTAC 2 cut(s) 544, 604
DdeI CTNAG 3 cut(s) 128, 212, 333
DpnI GATC 4 cut(s) 229, 417, 465, 491
DpnII GATC 4 cut(s) 227, 415, 463, 489
EaeI YGGCCR 2 cut(s) 91, 277
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 3 cut(s) 98, 118, 433
FaiI YATR 6 cut(s) 96, 116, 302, 405, 431, 458
FaqI GGGAC 1 cut(s) 576
FatI CATG 3 cut(s) 94, 114, 429
FauI CCCGC 1 cut(s) 542
FblI GTMKAC 2 cut(s) 42, 173
Fnu4HI GCNGC 2 cut(s) 198, 201
FokI GGATG 6 cut(s) 68, 116, 229, 254, 302, 323
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 2 cut(s) 198, 201
GlaI GCGC 2 cut(s) 71, 133
GluI GCNGC 2 cut(s) 198, 201
HaeIII GGCC 4 cut(s) 50, 93, 222, 279
HgaI GACGC 3 cut(s) 61, 245, 573
HhaI GCGC 2 cut(s) 72, 134
Hin1II CATG 3 cut(s) 98, 118, 433
Hin6I GCGC 2 cut(s) 70, 132
HinP1I GCGC 2 cut(s) 70, 132
HincII GTYRAC 2 cut(s) 43, 174
HindII GTYRAC 2 cut(s) 43, 174
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 2 cut(s) 87, 273
Hpy166II GTNNAC 4 cut(s) 43, 174, 370, 544
Hpy188I TCNGA 4 cut(s) 86, 129, 272, 443
Hpy188III TCNNGA 2 cut(s) 214, 386
Hpy8I GTNNAC 4 cut(s) 43, 174, 370, 544
Hpy99I CGWCG 4 cut(s) 44, 77, 178, 228
HpyAV CCTTC 3 cut(s) 154, 162, 553
HpyCH4III ACNGT 2 cut(s) 427, 541
HpyCH4V TGCA 4 cut(s) 25, 114, 118, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 329
HpyF3I CTNAG 3 cut(s) 128, 212, 333
Hsp92II CATG 3 cut(s) 98, 118, 433
HspAI GCGC 2 cut(s) 70, 132
KspI CCGCGG 1 cut(s) 550
Kzo9I GATC 4 cut(s) 227, 415, 463, 489
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 253, 586
Lsp1109I GCAGC 1 cut(s) 184
MalI GATC 4 cut(s) 229, 417, 465, 491
MboI GATC 4 cut(s) 227, 415, 463, 489
MboII GAAGA 2 cut(s) 77, 177
MhlI GDGCHC 1 cut(s) 502
MnlI CCTC 9 cut(s) 55, 216, 241, 244, 251, 275, 307, 373, 374
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 4 cut(s) 72, 134, 549, 567
MwoI GCNNNNNNNGC 2 cut(s) 56, 329
NdeII GATC 4 cut(s) 227, 415, 463, 489
NlaIII CATG 3 cut(s) 98, 118, 433
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 2 cut(s) 85, 271
NspI RCATGY 1 cut(s) 118
PaeI GCATGC 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 87, 273
PflFI GACNNNGTC 1 cut(s) 567
PkrI GCNGC 2 cut(s) 199, 202
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 36, 220
PsyI GACNNNGTC 1 cut(s) 567
RsaI GTAC 2 cut(s) 545, 605
RsaNI GTAC 2 cut(s) 544, 604
RseI CAYNNNNRTG 1 cut(s) 113
SacII CCGCGG 1 cut(s) 550
SalI GTCGAC 2 cut(s) 41, 172
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 2 cut(s) 198, 201
Sau3AI GATC 4 cut(s) 227, 415, 463, 489
Sau96I GGNCC 2 cut(s) 36, 220
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 502
SetI ASST 9 cut(s) 24, 125, 148, 173, 208, 299, 318, 366, 384
Sfr303I CCGCGG 1 cut(s) 550
SgrBI CCGCGG 1 cut(s) 550
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 118
SsiI CCGC 6 cut(s) 17, 201, 547, 549, 567, 607
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 2 cut(s) 427, 541
TaqI TCGA 3 cut(s) 42, 173, 226
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 2 cut(s) 87, 273
TscAI CASTG 1 cut(s) 546
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 420, 511
TspGWI ACGGA 2 cut(s) 28, 392
TspRI CASTG 1 cut(s) 546
Tth111I GACNNNGTC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 245
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 2 cut(s) 42, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.