pycom16g00420

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
254754 .. 255762
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
ATGGCGCGAAGGTCGATGCTTCTTGGATCGACTTGTATTTTCCGAGGCAAGCTCGGCCTTATGCTAAGCTCGCTCGCCTCGACCGGCCCAATGGCACCTGGTTTCTCGCATGGCCTTGCATGCTTATGGTCAATAACATTGGCAGCAATCCCAGGGCACCTTCTTGATTTTAAGATGATGACACTATTTGGATGTGGAGCCGTGCTTTTAAGGGATGCTGGATGCACTATAAACGATCTCCTTGACCGGGATATTGATACCATGGTAACGCCCACGGTGCCATTGAATAATTATAGGTTGATATCTTTTGTATCTGCCATTAAACCCAACATTATCTGCGCTTCATCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAGAGGTTCACATTCTGGCCTCAAGCCTATCCAGGTTTAACCTTTAATTGGGGAGCGTTATTAGGATGCGCCGCAGTTAAAGGAAGCGTTGATCCAACTGTGGTGCTCCCATTGTACTTTTCCGGAGTATGCTGGACGCTTTTGTATGATAAGATATATGCACATCAGGTACAACAAACTAGTTTGGTCAGAACTTCTGGTTCCCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.32

Weight (kDa)

9.06

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 40 - 96 1.1e-06 UbiA prenyltransferase family
UbiA PF01040 112 - 182 5.2e-11 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 94, 156, 277
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 500
AciI CCGC 1 cut(s) 450
AclWI GGATC 2 cut(s) 34, 464
AfaI GTAC 2 cut(s) 494, 549
AfiI CCNNNNNNNGG 2 cut(s) 247, 426
AgsI TTSAA 1 cut(s) 286
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 3 cut(s) 97, 151, 409
AluBI AGCT 2 cut(s) 52, 69
AluI AGCT 2 cut(s) 52, 69
Alw21I GWGCWC 1 cut(s) 486
AlwI GGATC 2 cut(s) 34, 464
Aor13HI TCCGGA 1 cut(s) 500
AoxI GGCC 4 cut(s) 55, 85, 112, 395
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 3 cut(s) 7, 341, 449
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanI GGYRCC 3 cut(s) 94, 156, 277
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 3 cut(s) 99, 153, 411
BcnI CCSGG 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 2 cut(s) 356, 558
BisI GCNGC 2 cut(s) 144, 450
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 2 cut(s) 145, 451
Bme1390I CCNGG 4 cut(s) 99, 153, 248, 411
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 5 cut(s) 96, 158, 199, 279, 580
BmrFI CCNGG 4 cut(s) 99, 153, 248, 411
BmsI GCATC 4 cut(s) 6, 205, 212, 434
BplI GAGNNNNNCTC 2 cut(s) 36, 68
Bpu1102I GCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 5 cut(s) 43, 151, 152, 261, 273
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 426
Bse118I RCCGGY 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 3 cut(s) 99, 153, 411
BseDI CCNNGG 5 cut(s) 43, 151, 152, 261, 273
BseGI GGATG 4 cut(s) 197, 220, 227, 449
BseLI CCNNNNNNNGG 2 cut(s) 247, 426
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 4 cut(s) 57, 87, 114, 397
BshNI GGYRCC 3 cut(s) 94, 156, 277
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 3 cut(s) 84, 247, 501
BslI CCNNNNNNNGG 2 cut(s) 247, 426
BsnI GGCC 4 cut(s) 57, 87, 114, 397
Bsp1286I GDGCHC 2 cut(s) 159, 486
Bsp13I TCCGGA 1 cut(s) 500
Bsp143I GATC 3 cut(s) 26, 235, 469
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 450
BspANI GGCC 4 cut(s) 57, 87, 114, 397
BspEI TCCGGA 1 cut(s) 500
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 5 cut(s) 96, 158, 199, 279, 580
BspPI GGATC 2 cut(s) 34, 464
BspT107I GGYRCC 3 cut(s) 94, 156, 277
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 5 cut(s) 43, 151, 152, 261, 273
BssMI GATC 3 cut(s) 26, 235, 469
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 99, 153, 411
Bst4CI ACNGT 2 cut(s) 277, 478
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 4 cut(s) 50, 71, 75, 121
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 261, 273
BstF5I GGATG 4 cut(s) 197, 220, 227, 449
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 3 cut(s) 7, 341, 449
BstKTI GATC 3 cut(s) 29, 238, 472
BstMBI GATC 3 cut(s) 26, 235, 469
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 54, 70, 120, 277
BstNI CCWGG 3 cut(s) 99, 153, 411
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 4 cut(s) 97, 151, 246, 409
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 4 cut(s) 57, 87, 114, 397
BtgI CCRYGG 2 cut(s) 261, 273
BtsCI GGATG 4 cut(s) 197, 220, 227, 449
Cac8I GCNNGC 4 cut(s) 50, 71, 75, 121
CciI TCATGA 1 cut(s) 375
CfoI GCGC 3 cut(s) 7, 341, 449
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 523
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 493, 548
CviAII CATG 4 cut(s) 110, 120, 262, 376
CviJI RGCY 8 cut(s) 52, 57, 69, 87, 114, 200, 397, 404
CviKI_1 RGCY 8 cut(s) 52, 57, 69, 87, 114, 200, 397, 404
CviQI GTAC 2 cut(s) 493, 548
DdeI CTNAG 1 cut(s) 65
DpnI GATC 3 cut(s) 28, 237, 471
DpnII GATC 3 cut(s) 26, 235, 469
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 303
EcoRII CCWGG 3 cut(s) 97, 151, 409
EcoRV GATATC 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 4 cut(s) 113, 123, 265, 379
FatI CATG 4 cut(s) 109, 119, 261, 375
Fnu4HI GCNGC 2 cut(s) 144, 450
FokI GGATG 4 cut(s) 204, 227, 234, 456
Fsp4HI GCNGC 2 cut(s) 144, 450
FspBI CTAG 2 cut(s) 356, 558
GlaI GCGC 3 cut(s) 6, 340, 448
GluI GCNGC 2 cut(s) 144, 450
HaeIII GGCC 4 cut(s) 57, 87, 114, 397
HapII CCGG 3 cut(s) 84, 247, 501
HgaI GACGC 1 cut(s) 523
HhaI GCGC 3 cut(s) 7, 341, 449
Hin1II CATG 4 cut(s) 113, 123, 265, 379
Hin6I GCGC 3 cut(s) 5, 339, 447
HinP1I GCGC 3 cut(s) 5, 339, 447
HpaII CCGG 3 cut(s) 84, 247, 501
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 2 cut(s) 44, 569
Hpy188III TCNNGA 3 cut(s) 164, 376, 501
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 3, 170
HpyCH4III ACNGT 2 cut(s) 277, 478
HpyCH4V TGCA 3 cut(s) 119, 225, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 70, 120, 277
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 4 cut(s) 113, 123, 265, 379
HspAI GCGC 3 cut(s) 5, 339, 447
Kpn2I TCCGGA 1 cut(s) 500
Kzo9I GATC 3 cut(s) 26, 235, 469
LmnI GCTCC 3 cut(s) 197, 431, 489
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 4 cut(s) 6, 205, 212, 434
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 2 cut(s) 356, 558
MaeIII GTNAC 1 cut(s) 265
MalI GATC 3 cut(s) 28, 237, 471
MboI GATC 3 cut(s) 26, 235, 469
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 159, 486
MluCI AATT 2 cut(s) 289, 424
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 5 cut(s) 38, 88, 375, 381, 408
MroI TCCGGA 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 6 cut(s) 171, 209, 321, 416, 423, 456
MslI CAYNNNNRTG 1 cut(s) 124
MspI CCGG 3 cut(s) 84, 247, 501
MspR9I CCNGG 4 cut(s) 99, 153, 248, 411
MvaI CCWGG 3 cut(s) 99, 153, 411
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 54, 70, 120, 277
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 261
NdeII GATC 3 cut(s) 26, 235, 469
NlaIII CATG 4 cut(s) 113, 123, 265, 379
NlaIV GGNNCC 5 cut(s) 96, 158, 199, 279, 580
NmeAIII GCCGAG 1 cut(s) 33
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PagI TCATGA 1 cut(s) 375
PasI CCCWGGG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 145, 451
Psp6I CCWGG 3 cut(s) 97, 151, 409
PspGI CCWGG 3 cut(s) 97, 151, 409
PspN4I GGNNCC 5 cut(s) 96, 158, 199, 279, 580
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 2 cut(s) 494, 549
RsaNI GTAC 2 cut(s) 493, 548
RseI CAYNNNNRTG 1 cut(s) 124
SaqAI TTAA 6 cut(s) 171, 209, 321, 416, 423, 456
SatI GCNGC 2 cut(s) 144, 450
Sau3AI GATC 3 cut(s) 26, 235, 469
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 4 cut(s) 99, 153, 248, 411
SduI GDGCHC 2 cut(s) 159, 486
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 4 cut(s) 6, 205, 212, 434
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 557
SphI GCATGC 1 cut(s) 123
Sse9I AATT 2 cut(s) 289, 424
SsiI CCGC 1 cut(s) 450
SspMI CTAG 2 cut(s) 356, 558
StyD4I CCNGG 4 cut(s) 97, 151, 246, 409
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 277, 478
TaqI TCGA 3 cut(s) 14, 29, 80
TasI AATT 2 cut(s) 289, 424
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 452
Tru1I TTAA 6 cut(s) 171, 209, 321, 416, 423, 456
Tru9I TTAA 6 cut(s) 171, 209, 321, 416, 423, 456
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 333, 392
XceI RCATGY 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 356, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.