pycom16g01610

CRAL/TRIO domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
997001 .. 998189
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGAGGTTCTTGATTGCGAGATCAATGGACCCGGACAAAGCAGCAAAGACGTTTGTTCAGTGGCACAAATGGAGGGCTTCGTTTGTTCCAAATGGGTTCGTTTCGGATGCCGAAGTGAAGGATCAGTTGGCAGACAGAAAGATCTTCTTGCAGGGTTTGTCCAAGGACGGGTACCCTGTGATGGTTGTGAAAGCAAGCCAGCATTGTCCTTCCAAGGACCAGCTCCAATTCAAGAAATTCGTGGTTCATCTGCTTGACAAAACAATCGCAAGCTCTTTCAGGGGAAAAGAAATTGGAAACGAAAAGATCGATCGTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

9.76

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 168, 181
AgsI TTSAA 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 223, 273
AluI AGCT 2 cut(s) 223, 273
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 28, 217
AsuC2I CCSGG 1 cut(s) 32
AvaII GGWCC 2 cut(s) 28, 217
BanI GGYRCC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 32
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 28, 217
BmgT120I GGNCC 2 cut(s) 28, 217
BmiI GGNNCC 2 cut(s) 30, 173
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 162, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 181
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 162, 213
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 168, 181
BseXI GCAGC 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 313
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 168, 181
Bsp143I GATC 5 cut(s) 20, 121, 141, 306, 310
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 30, 173
BspPI GGATC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 162, 213
BssMI GATC 5 cut(s) 20, 121, 141, 306, 310
BssT1I CCWWGG 2 cut(s) 162, 213
BstC8I GCNNGC 3 cut(s) 196, 200, 271
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 5 cut(s) 23, 124, 144, 309, 313
BstMBI GATC 5 cut(s) 20, 121, 141, 306, 310
BstMCI CGRYCG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 196, 200, 271
Cfr13I GGNCC 2 cut(s) 28, 217
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 4 cut(s) 77, 198, 223, 273
CviKI_1 RGCY 4 cut(s) 77, 198, 223, 273
CviQI GTAC 1 cut(s) 172
DpnI GATC 5 cut(s) 22, 123, 143, 308, 312
DpnII GATC 5 cut(s) 20, 121, 141, 306, 310
Eco130I CCWWGG 2 cut(s) 162, 213
Eco47I GGWCC 2 cut(s) 28, 217
EcoT14I CCWWGG 2 cut(s) 162, 213
ErhI CCWWGG 2 cut(s) 162, 213
FalI AAGNNNNNCTT 2 cut(s) 131, 163
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HapII CCGG 1 cut(s) 32
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 10, 232, 321
HpyAV CCTTC 2 cut(s) 112, 219
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 50
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 5 cut(s) 20, 121, 141, 306, 310
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 45, 137, 189, 212, 233, 265
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 50
MalI GATC 5 cut(s) 22, 123, 143, 308, 312
MboI GATC 5 cut(s) 20, 121, 141, 306, 310
MboII GAAGA 1 cut(s) 136
MflI RGATCY 1 cut(s) 141
MluCI AATT 3 cut(s) 227, 236, 291
MnlI CCTC 1 cut(s) 66
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
NciI CCSGG 1 cut(s) 32
NdeII GATC 5 cut(s) 20, 121, 141, 306, 310
NlaIV GGNNCC 2 cut(s) 30, 173
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PkrI GCNGC 1 cut(s) 43
Ple19I CGATCG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 30, 173
PspPI GGNCC 2 cut(s) 28, 217
PsuI RGATCY 1 cut(s) 141
PvuI CGATCG 1 cut(s) 313
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 5 cut(s) 20, 121, 141, 306, 310
Sau96I GGNCC 2 cut(s) 28, 217
ScrFI CCNGG 1 cut(s) 32
SetI ASST 4 cut(s) 8, 53, 225, 275
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 2 cut(s) 28, 217
Sse9I AATT 3 cut(s) 227, 236, 291
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 162, 213
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 309
TasI AATT 3 cut(s) 227, 236, 291
TscAI CASTG 1 cut(s) 65
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 28, 217
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.