Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1026961 .. 1027345

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGAGGTTGAAGCAAAGAAAATGAGAAGAGAAGTTGCTGCCATGGAGAAGGAGGTAGCTGCCATGCGTGTGGACAAAGAACATGAGAATAGGGCCAAGCGGTTTGGTCATACTAAAAGTTCCGTCAGCAGTGCTCAGGTGCTCTCTGGAAGGGGTCTCGCACGAAGTGGGTTAACACGCAGCACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

64

Amino Acids

7.02

Weight (kDa)

10.57

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	1 - 47	5.5e-15	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AdeI	CACNNNGTG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	2 cut(s)	136, 144
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	38, 59, 180
AspS9I	GGNCC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	136, 144
BbvI	GCAGC	2 cut(s)	25, 46
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	39, 60, 181
BlsI	GCNGC	3 cut(s)	40, 61, 182
BmgT120I	GGNCC	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	25, 46
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	136, 144
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	136, 144
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	25, 46
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	93
CviAII	CATG	3 cut(s)	43, 64, 83
CviJI	RGCY	2 cut(s)	59, 95
CviKI_1	RGCY	2 cut(s)	59, 95
DdeI	CTNAG	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	46, 67, 86
FaiI	YATR	4 cut(s)	44, 65, 84, 111
FatI	CATG	3 cut(s)	42, 63, 82
Fnu4HI	GCNGC	3 cut(s)	39, 60, 181
Fsp4HI	GCNGC	3 cut(s)	39, 60, 181
GluI	GCNGC	3 cut(s)	39, 60, 181
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	46, 67, 86
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HpaI	GTTAAC	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	73, 174
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	73, 174
HpyAV	CCTTC	2 cut(s)	43, 144
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	46, 67, 86
KspAI	GTTAAC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	122, 132
Lsp1109I	GCAGC	2 cut(s)	25, 46
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	136, 144
MnlI	CCTC	1 cut(s)	46
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	3 cut(s)	46, 67, 86
PkrI	GCNGC	3 cut(s)	40, 61, 182
PspPI	GGNCC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	39, 60, 181
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	136, 144
SetI	ASST	4 cut(s)	9, 57, 61, 141
SgeI	CNNG	9 cut(s)	55, 76, 80, 95, 109, 149, 159, 170, 174
SmiMI	CAYNNNNRTG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	3 cut(s)	38, 59, 180
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.