Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1710401 .. 1711159

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTTTTGGGCATCGGGGGCAGCGGGGTGGGCCGGGCCCTAGCCGCCTTGCCGCAGCTCTTTTGCTCTGCCTCTTTTCCGGAGACCGACGCCGATGACGACGAGGACAATGACGCGATAGACCACAAAGCCGAAATCCCGGGTGTCGGAAAAGTGACTCCAGTCACAATCCGGTGGCGCAACATCAACTGCTCCCTCTCTGAGCTGTTCGATTTCTGCTTAAAAACGGGGCCGTCAGGGTCAGGGAAGACGACGCTGCTAAATGTACTTGCGGGTCAGCTAGCTGCGTCGCCACGGCTACGTTTATCAGGACTGTTGGAGGTAAATGGCAGTCCTAGTCCAAACAAAGCCTATAAGTTTGCTCATGTGAGACAGGAGGACCTGTTTTTCTCGCAGCTGACGGTGAGAGAGACGTTGTCACTTGCCGCGGAGCTGCAGCTTCCGGAGATATCTTCTTCTGAAGAAAGATTGGAGTATGTGAACACAGCCTGTTGTTCAAGTTGGCGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

171

Amino Acids

18.37

Weight (kDa)

4.92

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	76 - 152	6.7e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 428
AccIII	TCCGGA	2 cut(s)	79, 442
AciI	CCGC	6 cut(s)	24, 45, 53, 272, 426, 428
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	498
AluBI	AGCT	7 cut(s)	58, 205, 280, 284, 397, 433, 439
AluI	AGCT	7 cut(s)	58, 205, 280, 284, 397, 433, 439
Alw26I	GTCTC	3 cut(s)	77, 364, 404
Ama87I	CYCGRG	1 cut(s)	139
Aor13HI	TCCGGA	2 cut(s)	79, 442
AoxI	GGCC	3 cut(s)	31, 36, 230
ApaI	GGGCCC	1 cut(s)	40
ApeKI	GCWGC	7 cut(s)	21, 55, 256, 284, 394, 433, 436
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	5 cut(s)	31, 36, 37, 230, 379
AsuC2I	CCSGG	3 cut(s)	35, 140, 141
AsuHPI	GGTGA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	7 cut(s)	33, 67, 243, 271, 406, 420, 448
BceAI	ACGGC	2 cut(s)	217, 311
BcnI	CCSGG	3 cut(s)	35, 140, 141
BcoDI	GTCTC	3 cut(s)	77, 364, 404
BfaI	CTAG	3 cut(s)	41, 281, 336
BfmI	CTRYAG	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	35, 140, 141
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	5 cut(s)	31, 36, 37, 230, 379
BmiI	GGNNCC	2 cut(s)	38, 231
BmrFI	CCNGG	3 cut(s)	35, 140, 141
BmsI	GCATC	1 cut(s)	21
BmtI	GCTAGC	1 cut(s)	284
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	3 cut(s)	35, 140, 141
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	139, 293, 426
BsaWI	WCCGGW	3 cut(s)	79, 171, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	2 cut(s)	79, 442
BseDI	CCNNGG	3 cut(s)	139, 293, 426
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	7 cut(s)	33, 67, 243, 271, 406, 420, 448
Bsh1236I	CGCG	2 cut(s)	116, 428
BshFI	GGCC	3 cut(s)	33, 38, 232
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	34, 80, 140, 172, 443
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	77, 364, 404
BsmBI	CGTCTC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	33, 38, 232
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	139
Bsp120I	GGGCCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp13I	TCCGGA	2 cut(s)	79, 442
BspACI	CCGC	6 cut(s)	24, 45, 53, 272, 426, 428
BspANI	GGCC	3 cut(s)	33, 38, 232
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	2 cut(s)	79, 442
BspFNI	CGCG	2 cut(s)	116, 428
BspLI	GGNNCC	2 cut(s)	38, 231
BspMAI	CTGCAG	1 cut(s)	438
BspOI	GCTAGC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	139, 293, 426
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	315, 403
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	2 cut(s)	293, 426
BstFNI	CGCG	2 cut(s)	116, 428
BstHHI	GCGC	1 cut(s)	180
BstMAI	GTCTC	3 cut(s)	77, 364, 404
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 30, 44
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	33, 138, 139
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	116, 428
BstV1I	GCAGC	7 cut(s)	33, 67, 243, 271, 406, 420, 448
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	33, 38, 232
BtgI	CCRYGG	2 cut(s)	293, 426
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	5 cut(s)	31, 36, 37, 230, 379
Cfr42I	CCGCGG	1 cut(s)	429
Cfr9I	CCCGGG	1 cut(s)	139
CseI	GACGC	4 cut(s)	98, 122, 262, 276
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	37, 379
EcoRV	GATATC	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	1 cut(s)	368
FaiI	YATR	3 cut(s)	354, 366, 477
FatI	CATG	1 cut(s)	364
FauI	CCCGC	2 cut(s)	17, 265
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	3 cut(s)	41, 281, 336
GlaI	GCGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	33, 38, 232
HapII	CCGG	5 cut(s)	34, 80, 140, 172, 443
HgaI	GACGC	4 cut(s)	98, 122, 262, 276
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	5 cut(s)	34, 80, 140, 172, 443
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	149, 202, 460
Hpy188III	TCNNGA	3 cut(s)	80, 309, 443
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	4 cut(s)	92, 104, 256, 292
HpyCH4III	ACNGT	2 cut(s)	315, 403
HpyCH4IV	ACGT	2 cut(s)	301, 413
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 30, 44
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	301, 413
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	2 cut(s)	79, 442
KspI	CCGCGG	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	197, 430
Lsp1109I	GCAGC	7 cut(s)	33, 67, 243, 271, 406, 420, 448
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	41, 281, 336
MaeII	ACGT	2 cut(s)	301, 413
MaeIII	GTNAC	3 cut(s)	154, 163, 417
MboII	GAAGA	4 cut(s)	259, 444, 447, 473
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	127, 297
MnlI	CCTC	5 cut(s)	82, 97, 206, 313, 370
MroI	TCCGGA	2 cut(s)	79, 442
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	3 cut(s)	24, 397, 428
MspI	CCGG	5 cut(s)	34, 80, 140, 172, 443
MspR9I	CCNGG	3 cut(s)	35, 140, 141
MvnI	CGCG	2 cut(s)	116, 428
MwoI	GCNNNNNNNGC	3 cut(s)	18, 30, 44
NciI	CCSGG	3 cut(s)	35, 140, 141
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	38, 231
NmuCI	GTSAC	3 cut(s)	154, 163, 417
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	379
PshAI	GACNNNNGTC	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	38, 231
PspOMI	GGGCCC	1 cut(s)	36
PspPI	GGNCC	5 cut(s)	31, 36, 37, 230, 379
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	221
Sau96I	GGNCC	5 cut(s)	31, 36, 37, 230, 379
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	35, 140, 141
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	379
SmaI	CCCGGG	1 cut(s)	141
SsiI	CCGC	6 cut(s)	24, 45, 53, 272, 426, 428
SspMI	CTAG	3 cut(s)	41, 281, 336
StyD4I	CCNGG	3 cut(s)	33, 138, 139
TaaI	ACNGT	2 cut(s)	315, 403
TaiI	ACGT	2 cut(s)	304, 416
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	101
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	3 cut(s)	47, 55, 428
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	3 cut(s)	154, 163, 417
TseI	GCWGC	7 cut(s)	21, 55, 256, 284, 394, 433, 436
Tsp45I	GTSAC	3 cut(s)	154, 163, 417
TspMI	CCCGGG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	379
XmaI	CCCGGG	1 cut(s)	139
XspI	CTAG	3 cut(s)	41, 281, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.