Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1804939 .. 1805816

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTTATATGATCTCAGTTGGTCTCGGCAGTGCTATAAGAATAATATTTCCCTGTTATCATAAAAGCACCAAGGTGTCGAATGAATTGGGAGCAGGACGGCCGCAAGGCACGCAATTAGCTCTACGGGTCATGACTGCAATGGCCTTGTTAGAGGGTGCTGGAATCACAACAGCAACGGTTTTGGTACACTTTGTTTGGGGAAAGCTCTACAGCAATGAGAATGAAGTGATCGTATATGTTGCTAGAATGATGCCACTGCTTGCAGTTTCCGACTTCTTGGATGGATTCCAATGTGTGCTTTCAGGTCCTAATCAATCTCTTGTCGGAATTCCTACTGCTGTGCTTTTTGCTTTATTCCTCCATATTGGAGGTATGGGGCTTTGGATGGGGATCATTTGTGGGCTTCTTGTTCAACTCACAGCGTTTGTTGCAGTAAATTTGTGCACTGATTGGCATGAAGAGGTAAGTCATTCATTTCACATTGCTAAAGCATTTTGTATATGTTTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071944 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

172

Amino Acids

18.5

Weight (kDa)

6.57

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	3 - 121	2.8e-08	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	330, 439
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	416
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	2 cut(s)	122, 208
AluI	AGCT	2 cut(s)	122, 208
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	29
Alw44I	GTGCAC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	101, 144
ApaLI	GTGCAC	1 cut(s)	445
ApoI	RAATTY	2 cut(s)	330, 439
AspS9I	GGNCC	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	449
BccI	CCATC	2 cut(s)	278, 382
BceAI	ACGGC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	72
Bse3DI	GCAATG	3 cut(s)	147, 223, 483
Bse8I	GATNNNNATC	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	289, 393
BseJI	GATNNNNATC	1 cut(s)	392
BseMI	GCAATG	3 cut(s)	147, 223, 483
BseMII	CTCAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	449
BseX3I	CGGCCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	103, 146
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	103, 146
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	12, 231, 393
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	103, 146
BspCNI	CTCAG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	132
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	147, 223, 483
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	12, 231, 393
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	113, 264
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	289, 393
BstKTI	GATC	3 cut(s)	15, 234, 396
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	12, 231, 393
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 431
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	449
BstZI	CGGCCG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	103, 146
BtsCI	GGATG	2 cut(s)	289, 393
BtsI	GCAGTG	2 cut(s)	37, 257
BtsIMutI	CAGTG	3 cut(s)	37, 257, 447
Cac8I	GCNNGC	2 cut(s)	113, 264
CciI	TCATGA	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	133, 458
CviJI	RGCY	6 cut(s)	103, 122, 146, 208, 382, 406
CviKI_1	RGCY	6 cut(s)	103, 122, 146, 208, 382, 406
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	3 cut(s)	14, 233, 395
DpnII	GATC	3 cut(s)	12, 231, 393
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	308
Eco52I	CGGCCG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	136, 461
FatI	CATG	2 cut(s)	132, 457
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	2 cut(s)	296, 400
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	103, 146
Hin1II	CATG	2 cut(s)	136, 461
HinfI	GANTC	2 cut(s)	165, 288
Hpy166II	GTNNAC	2 cut(s)	190, 447
Hpy188I	TCNGA	2 cut(s)	274, 329
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	190, 447
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	140, 266, 434, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 431
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	136, 461
Kzo9I	GATC	3 cut(s)	12, 231, 393
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	67, 81, 147, 291
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	246
MalI	GATC	3 cut(s)	14, 233, 395
MboI	GATC	3 cut(s)	12, 231, 393
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	4 cut(s)	86, 116, 330, 439
MmeI	TCCRAC	2 cut(s)	297, 307
MnlI	CCTC	4 cut(s)	148, 365, 371, 457
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	112, 431
NdeII	GATC	3 cut(s)	12, 231, 393
NlaIII	CATG	2 cut(s)	136, 461
NmeAIII	GCCGAG	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	74
PagI	TCATGA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	165, 288
PkrI	GCNGC	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	3 cut(s)	12, 231, 393
Sau96I	GGNCC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	6 cut(s)	78, 124, 210, 310, 376, 468
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	86, 116, 330, 439
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	86, 116, 330, 439
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	165, 288
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	3 cut(s)	37, 264, 454
TspDTI	ATGAA	4 cut(s)	99, 240, 465, 474
TspRI	CASTG	3 cut(s)	37, 264, 454
VneI	GTGCAC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	330, 439
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.