pycom16g04070

Belongs to the CTL (choline transporter-like) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
2496603 .. 2496938
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGGTGGGGTCCACTGCAATGTTGATGGGAATGGTCTTGGTGGGGATAGCAATGGTGGTAGTGGAAAGTGCCGTTACATCTATTTATATCTGTTACGCAGAAGACCCCTTGTTGATTCACAGGTGGGATGCTGAGTTCTTCAACCAGATGTCAGAGATGCTACACCAGCGTCTTCAACATAGGAGCTCACGAGCGAGGGAAGTGTTAACCCACCATCGCTTTGATAACCACACACAAGAAACACTCCCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.66

Weight (kDa)

6.01

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 142, 176
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw21I GWGCWC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 9
AvaII GGWCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 108, 164
Bbv12I GWGCWC 1 cut(s) 188
BccI CCATC 2 cut(s) 19, 222
BceAI ACGGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 2 cut(s) 118, 147
BpiI GAAGAC 2 cut(s) 108, 164
Bse3DI GCAATG 2 cut(s) 24, 57
BseGI GGATG 1 cut(s) 133
BseMI GCAATG 2 cut(s) 24, 57
BseMII CTCAG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 24, 57
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV2I GAAGAC 2 cut(s) 108, 164
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 158
CviJI RGCY 1 cut(s) 186
CviKI_1 RGCY 1 cut(s) 186
DdeI CTNAG 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 188
FaiI YATR 2 cut(s) 87, 180
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 188
HgaI GACGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 115
HpaI GTTAAC 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 12, 207
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 2 cut(s) 12, 207
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 106, 158, 179
LweI GCATC 2 cut(s) 118, 147
MaeIII GTNAC 2 cut(s) 73, 92
MboII GAAGA 3 cut(s) 113, 130, 164
MhlI GDGCHC 1 cut(s) 188
MnlI CCTC 1 cut(s) 189
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 188
SetI ASST 2 cut(s) 125, 188
SfaNI GCATC 2 cut(s) 118, 147
SgeI CNNG 9 cut(s) 49, 121, 133, 157, 178, 201, 203, 207, 248
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 19
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.