pycom16g05180

Alpha-1,4-glucan-protein synthase UDP-forming

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
3354479 .. 3358519
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGGCGGGAGGAGCTGCTTTCTCCGACGCAAAACCGACGCCGATCCTGAAAGACGAGCTCGACATTGTAATCCCGACGATTCGAAACCTGGACTTCTTGGAGATGTGGCGGCCGTACTTCGAGCCCTACCACCTGATCATCGTCCAGGACGGCGATCCGTCGCGGACCGTCAGGGTCCCTGACGGATTCGACTACGAGCTCTTCAATCGCAACGATATTAATCGAATTCTGGGTCCCAAGGCCTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGCTGCTTTGGGTACTTGGTCTCGAAGAAGAAGTACATCTTTACCATTGACGACGATTGCTTTGTTGCGAAAGACCCATCTGGGAAAGAGATCAATGCACCTGAACAACATATAAAGAACCTGTTAAATCCATCAACTCCTCTATTTTTCAAGACTTTATATGATCCGTACAGAGAAGGTGCAGACTTTGTACGCGGATATCCTTTTAGTCTCCGTGAGGGTGTTCCAACCGCAGTTTCTCATGGTCTCTGGCTCAACATCCCGGACTATGATGCTCCCACCCAGCTTGCCAAGCCTCTGGAAAGAAACACTAGGTTTGTTGATGCAGTTCTGACAATACCCAAGGGAACTCTATTTCCTATGTGTGGTATGAACTTGGCTTTCAACCGTCAACTGATTGGACCGGCAATGTACTTCGGACTCATGGGTGATGGTCAGCCAATTGGAAGATATGATGATATGTGGGCTGGCTGGTGCATGAAGGCTAAGGTTAATTGTCTCACAAACAAAAAGAAGCGTCACAGCACAAACTGCTGGGTCGTCATCGATGGCAAGGTGTATGATGTGTCAACCTATTTGGACGACCACCCTGGTGGAGACGACGTACTCCTGGCTGCAACTGGACGAGATGCCACCGAAGATTTTGAAGATGCTGGGCACAGCAAAACTGCCAGGGAGGAAATGAAAGCCTTACGTATTGGAGAACTTGACACCACTTCCTCGGATATTCCAGGGCTAGAGATTTTCTCCGAGAATCAGCCACCCGGCTATCCCAAGAAGCTTGCCAATTTGACAAAGCGATACTGGATTGTTCCAGCGGCTGTTGTTGGCATCTCCGTGGTTATTGGAGTCGTGTACTTGCGCAAGAAGTGA

Protein Analysis

382

Amino Acids

42.73

Weight (kDa)

6.12

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 16 - 255 6.3e-125 Reversibly glycosylated polypeptide
Cyt-b5 PF00173 262 - 328 2.1e-23 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1136
AccII CGCG 2 cut(s) 163, 468
AciI CCGC 6 cut(s) 5, 109, 163, 468, 504, 1091
AclWI GGATC 3 cut(s) 37, 149, 431
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 8 cut(s) 116, 287, 308, 443, 465, 686, 879, 1130
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 5 cut(s) 205, 259, 424, 658, 920
AjnI CCWGG 6 cut(s) 87, 144, 862, 882, 944, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AleI CACNNNNGTG 1 cut(s) 864
AloI GAACNNNNNNTCC 2 cut(s) 613, 645
AluBI AGCT 5 cut(s) 14, 58, 199, 559, 1054
AluI AGCT 5 cut(s) 14, 58, 199, 559, 1054
Alw21I GWGCWC 2 cut(s) 60, 201
Alw26I GTCTC 5 cut(s) 298, 488, 524, 776, 864
AlwI GGATC 3 cut(s) 37, 149, 431
AlwNI CAGNNNCTG 1 cut(s) 1094
AoxI GGCC 2 cut(s) 110, 240
ApeKI GCWGC 3 cut(s) 14, 276, 887
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 4 cut(s) 217, 249, 317, 349
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 1 cut(s) 1137
AspS9I GGNCC 4 cut(s) 165, 175, 233, 674
AsuC2I CCSGG 2 cut(s) 536, 1038
AsuHPI GGTGA 1 cut(s) 713
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 4 cut(s) 165, 175, 233, 674
BaeGI GKGCMC 1 cut(s) 933
BanII GRGCYC 3 cut(s) 60, 126, 201
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
Bbv12I GWGCWC 2 cut(s) 60, 201
BbvI GCAGC 2 cut(s) 263, 874
BccI CCATC 4 cut(s) 358, 412, 698, 815
BceAI ACGGC 2 cut(s) 97, 166
BciT130I CCWGG 6 cut(s) 89, 146, 864, 884, 946, 1005
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 2 cut(s) 536, 1038
BcoDI GTCTC 5 cut(s) 298, 488, 524, 776, 864
BfaI CTAG 2 cut(s) 585, 1010
BisI GCNGC 5 cut(s) 15, 110, 277, 888, 1092
BlsI GCNGC 5 cut(s) 16, 111, 278, 889, 1093
Bme1390I CCNGG 8 cut(s) 89, 146, 536, 864, 884, 946, 1005, 1038
Bme18I GGWCC 4 cut(s) 165, 175, 233, 674
BmgT120I GGNCC 4 cut(s) 165, 175, 233, 674
BmiI GGNNCC 4 cut(s) 176, 177, 234, 235
BmrFI CCNGG 8 cut(s) 89, 146, 536, 864, 884, 946, 1005, 1038
BmsI GCATC 5 cut(s) 535, 586, 892, 913, 1113
BplI GAGNNNNNCTC 2 cut(s) 1004, 1036
Bpu10I CCTNAGC 1 cut(s) 759
Bpu14I TTCGAA 1 cut(s) 82
BpuMI CCSGG 2 cut(s) 536, 1038
Bsa29I ATCGAT 1 cut(s) 819
BsaAI YACGTR 1 cut(s) 968
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 2 cut(s) 298, 524
BsaJI CCNNGG 7 cut(s) 237, 615, 862, 945, 993, 1004, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 898, 1082
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 6 cut(s) 89, 146, 864, 884, 946, 1005
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 7 cut(s) 237, 615, 862, 945, 993, 1004, 1110
BseGI GGATG 1 cut(s) 531
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMI GCAATG 1 cut(s) 687
BseNI ACTGG 2 cut(s) 898, 1082
BseRI GAGGAG 2 cut(s) 24, 402
BseSI GKGCMC 1 cut(s) 933
BseX3I CGGCCG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 263, 874
BseYI CCCAGC 3 cut(s) 555, 807, 926
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 2 cut(s) 163, 468
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 112, 242
BshVI ATCGAT 1 cut(s) 819
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 60, 201
BsiSI CCGG 3 cut(s) 536, 677, 1038
BslFI GGGAC 2 cut(s) 161, 219
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 5 cut(s) 298, 488, 524, 776, 864
BsmBI CGTCTC 1 cut(s) 864
BsmFI GGGAC 2 cut(s) 161, 219
BsnI GGCC 2 cut(s) 112, 242
Bso31I GGTCTC 2 cut(s) 298, 524
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 4 cut(s) 60, 126, 201, 933
Bsp143I GATC 5 cut(s) 42, 135, 154, 363, 436
BspACI CCGC 6 cut(s) 5, 109, 163, 468, 504, 1091
BspANI GGCC 2 cut(s) 112, 242
BspDI ATCGAT 1 cut(s) 819
BspFNI CGCG 2 cut(s) 163, 468
BspLI GGNNCC 4 cut(s) 176, 177, 234, 235
BspPI GGATC 3 cut(s) 37, 149, 431
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 82
BspTNI GGTCTC 2 cut(s) 298, 524
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 2 cut(s) 898, 1082
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 7 cut(s) 237, 615, 862, 945, 993, 1004, 1110
BssMI GATC 5 cut(s) 42, 135, 154, 363, 436
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 237, 615
Bst2UI CCWGG 6 cut(s) 89, 146, 864, 884, 946, 1005
Bst4CI ACNGT 2 cut(s) 169, 662
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 804
BstBAI YACGTR 1 cut(s) 968
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 3 cut(s) 561, 742, 1056
BstDEI CTNAG 1 cut(s) 759
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 2 cut(s) 163, 468
BstHHI GCGC 1 cut(s) 1137
BstKTI GATC 5 cut(s) 45, 138, 157, 366, 439
BstMAI GTCTC 5 cut(s) 298, 488, 524, 776, 864
BstMBI GATC 5 cut(s) 42, 135, 154, 363, 436
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 3 cut(s) 11, 565, 804
BstNI CCWGG 6 cut(s) 89, 146, 864, 884, 946, 1005
BstSCI CCNGG 8 cut(s) 87, 144, 534, 862, 882, 944, 1003, 1036
BstSLI GKGCMC 1 cut(s) 933
BstSNI TACGTA 1 cut(s) 968
BstUI CGCG 2 cut(s) 163, 468
BstV1I GCAGC 2 cut(s) 263, 874
BstXI CCANNNNNNTGG 2 cut(s) 571, 866
BstZI CGGCCG 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 819
BsuRI GGCC 2 cut(s) 112, 242
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 1 cut(s) 1110
BtsCI GGATG 1 cut(s) 531
Cac8I GCNNGC 3 cut(s) 561, 742, 1056
CaiI CAGNNNCTG 1 cut(s) 1094
CfoI GCGC 1 cut(s) 1137
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 4 cut(s) 165, 175, 233, 674
ClaI ATCGAT 1 cut(s) 819
CpoI CGGWCCG 1 cut(s) 165
CseI GACGC 3 cut(s) 35, 46, 779
Csp6I GTAC 8 cut(s) 115, 286, 307, 442, 464, 685, 878, 1129
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CspI CGGWCCG 1 cut(s) 165
CviAII CATG 3 cut(s) 515, 697, 751
CviQI GTAC 8 cut(s) 115, 286, 307, 442, 464, 685, 878, 1129
DdeI CTNAG 1 cut(s) 759
DpnI GATC 5 cut(s) 44, 137, 156, 365, 438
DpnII GATC 5 cut(s) 42, 135, 154, 363, 436
EaeI YGGCCR 1 cut(s) 110
EagI CGGCCG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 58, 199
EclXI CGGCCG 1 cut(s) 110
Eco105I TACGTA 1 cut(s) 968
Eco130I CCWWGG 2 cut(s) 237, 615
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 3 cut(s) 60, 126, 201
Eco31I GGTCTC 2 cut(s) 298, 524
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 4 cut(s) 165, 175, 233, 674
Eco52I CGGCCG 1 cut(s) 110
Eco53kI GAGCTC 2 cut(s) 58, 199
EcoICRI GAGCTC 2 cut(s) 58, 199
EcoO109I RGGNCCY 2 cut(s) 175, 233
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 6 cut(s) 87, 144, 862, 882, 944, 1003
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 237, 615
EcoT38I GRGCYC 3 cut(s) 60, 126, 201
ErhI CCWWGG 2 cut(s) 237, 615
Esp3I CGTCTC 1 cut(s) 864
FaeI CATG 3 cut(s) 518, 700, 754
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 2 cut(s) 161, 219
FatI CATG 3 cut(s) 514, 696, 750
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 15, 110, 277, 888, 1092
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 3 cut(s) 60, 126, 201
Fsp4HI GCNGC 5 cut(s) 15, 110, 277, 888, 1092
FspBI CTAG 2 cut(s) 585, 1010
FspI TGCGCA 1 cut(s) 1136
GlaI GCGC 1 cut(s) 1136
GluI GCNGC 5 cut(s) 15, 110, 277, 888, 1092
GsaI CCCAGC 3 cut(s) 559, 811, 930
HaeIII GGCC 2 cut(s) 112, 242
HapII CCGG 3 cut(s) 536, 677, 1038
HgaI GACGC 3 cut(s) 35, 46, 779
HhaI GCGC 1 cut(s) 1137
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 518, 700, 754
Hin6I GCGC 1 cut(s) 1135
HinP1I GCGC 1 cut(s) 1135
HincII GTYRAC 2 cut(s) 665, 843
HindII GTYRAC 2 cut(s) 665, 843
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 6 cut(s) 79, 186, 263, 693, 1027, 1122
HpaII CCGG 3 cut(s) 536, 677, 1038
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 3 cut(s) 665, 843, 1129
Hpy188I TCNGA 5 cut(s) 25, 606, 692, 997, 1024
Hpy188III TCNNGA 5 cut(s) 46, 73, 295, 424, 572
Hpy8I GTNNAC 3 cut(s) 665, 843, 1129
Hpy99I CGWCG 6 cut(s) 29, 40, 79, 163, 329, 878
HpyAV CCTTC 3 cut(s) 265, 443, 748
HpyCH4III ACNGT 2 cut(s) 169, 662
HpyCH4IV ACGT 2 cut(s) 876, 967
HpyCH4V TGCA 6 cut(s) 249, 371, 455, 599, 750, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 565, 804
HpyF3I CTNAG 1 cut(s) 759
HpySE526I ACGT 2 cut(s) 876, 967
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 518, 700, 754
HspAI GCGC 1 cut(s) 1135
KflI GGGWCCC 2 cut(s) 175, 233
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 42, 135, 154, 363, 436
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 11, 553
Lsp1109I GCAGC 2 cut(s) 263, 874
LweI GCATC 5 cut(s) 535, 586, 892, 913, 1113
MaeI CTAG 2 cut(s) 585, 1010
MaeII ACGT 2 cut(s) 876, 967
MaeIII GTNAC 1 cut(s) 791
MalI GATC 5 cut(s) 44, 137, 156, 365, 438
MboI GATC 5 cut(s) 42, 135, 154, 363, 436
MboII GAAGA 6 cut(s) 193, 310, 313, 732, 923, 932
MfeI CAATTG 1 cut(s) 714
MhlI GDGCHC 4 cut(s) 60, 126, 201, 933
MluCI AATT 4 cut(s) 225, 714, 766, 1060
MlyI GAGTC 3 cut(s) 257, 687, 1131
MmeI TCCRAC 2 cut(s) 48, 524
MnlI CCTC 6 cut(s) 253, 423, 484, 579, 943, 1003
MseI TTAA 3 cut(s) 219, 398, 765
MslI CAYNNNNRTG 2 cut(s) 864, 1109
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 3 cut(s) 536, 677, 1038
MspR9I CCNGG 8 cut(s) 89, 146, 536, 864, 884, 946, 1005, 1038
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 6 cut(s) 89, 146, 864, 884, 946, 1005
MvnI CGCG 2 cut(s) 163, 468
MwoI GCNNNNNNNGC 3 cut(s) 11, 565, 804
NciI CCSGG 2 cut(s) 536, 1038
NdeII GATC 5 cut(s) 42, 135, 154, 363, 436
NlaIII CATG 3 cut(s) 518, 700, 754
NlaIV GGNNCC 4 cut(s) 176, 177, 234, 235
NmuCI GTSAC 1 cut(s) 791
NsbI TGCGCA 1 cut(s) 1136
NspV TTCGAA 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 864
PceI AGGCCT 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 79, 186, 1027
PfoI TCCNGGA 2 cut(s) 144, 534
PkrI GCNGC 5 cut(s) 16, 111, 278, 889, 1093
PleI GAGTC 3 cut(s) 257, 687, 1130
PpsI GAGTC 3 cut(s) 257, 687, 1130
Ppu21I YACGTR 1 cut(s) 968
PpuMI RGGWCCY 2 cut(s) 175, 233
PshBI ATTAAT 1 cut(s) 219
Psp124BI GAGCTC 2 cut(s) 60, 201
Psp5II RGGWCCY 2 cut(s) 175, 233
Psp6I CCWGG 6 cut(s) 87, 144, 862, 882, 944, 1003
PspFI CCCAGC 3 cut(s) 555, 807, 926
PspGI CCWGG 6 cut(s) 87, 144, 862, 882, 944, 1003
PspN4I GGNNCC 4 cut(s) 176, 177, 234, 235
PspPI GGNCC 4 cut(s) 165, 175, 233, 674
PspPPI RGGWCCY 2 cut(s) 175, 233
PstNI CAGNNNCTG 1 cut(s) 1094
RsaI GTAC 8 cut(s) 116, 287, 308, 443, 465, 686, 879, 1130
RsaNI GTAC 8 cut(s) 115, 286, 307, 442, 464, 685, 878, 1129
RseI CAYNNNNRTG 2 cut(s) 864, 1109
Rsr2I CGGWCCG 1 cut(s) 165
RsrII CGGWCCG 1 cut(s) 165
SacI GAGCTC 2 cut(s) 60, 201
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 219, 398, 765
SatI GCNGC 5 cut(s) 15, 110, 277, 888, 1092
Sau3AI GATC 5 cut(s) 42, 135, 154, 363, 436
Sau96I GGNCC 4 cut(s) 165, 175, 233, 674
SchI GAGTC 3 cut(s) 257, 687, 1131
ScrFI CCNGG 8 cut(s) 89, 146, 536, 864, 884, 946, 1005, 1038
SduI GDGCHC 4 cut(s) 60, 126, 201, 933
SfaNI GCATC 5 cut(s) 535, 586, 892, 913, 1113
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 4 cut(s) 165, 175, 233, 674
SmiMI CAYNNNNRTG 2 cut(s) 864, 1109
SnaBI TACGTA 1 cut(s) 968
Sse9I AATT 4 cut(s) 225, 714, 766, 1060
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 6 cut(s) 5, 109, 163, 468, 504, 1091
SspMI CTAG 2 cut(s) 585, 1010
SstI GAGCTC 2 cut(s) 60, 201
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 8 cut(s) 87, 144, 534, 862, 882, 944, 1003, 1036
StyI CCWWGG 2 cut(s) 237, 615
TaaI ACNGT 2 cut(s) 169, 662
TaiI ACGT 2 cut(s) 879, 970
TaqI TCGA 7 cut(s) 60, 82, 120, 189, 223, 296, 819
TasI AATT 4 cut(s) 225, 714, 766, 1060
TatI WGTACW 3 cut(s) 306, 684, 1128
TauI GCSGC 2 cut(s) 112, 1094
TfiI GAWTC 3 cut(s) 79, 186, 1027
Tru1I TTAA 3 cut(s) 219, 398, 765
Tru9I TTAA 3 cut(s) 219, 398, 765
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 3 cut(s) 14, 276, 887
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 3 cut(s) 659, 767, 971
TspGWI ACGGA 5 cut(s) 147, 198, 429, 476, 1099
VpaK11BI GGWCC 4 cut(s) 165, 175, 233, 674
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 225
XspI CTAG 2 cut(s) 585, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.