pycom16g05400

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
3503977 .. 3504257
281 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGGTAATTGCTGGTTTTGAACCAACGAAAGAGATGCTGAAAGGGGTCAGAAGAAGATGTAGGCGAGAGCTCGACTATGAGAGTGACGATCATGTTGATACCTTGGCCAGAAGGTTCAAAATTGTGATGGGTTCAGAGAATCGCAGGGACTGGCTGTTTAATCTCAACTACAGCACCGGATATGCCTAA

Protein Analysis

63

Amino Acids

7.41

Weight (kDa)

8.98

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 105
AgsI TTSAA 2 cut(s) 20, 118
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 150
AoxI GGCC 1 cut(s) 105
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BfmI CTRYAG 1 cut(s) 169
BmsI GCATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 155
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 102
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 150
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 70, 107, 154
CviKI_1 RGCY 3 cut(s) 70, 107, 154
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 78, 93, 183
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 177
Hin1II CATG 1 cut(s) 95
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 50, 136
HpyAV CCTTC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 121, 130, 136
LweI GCATC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 63, 66
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 2 cut(s) 6, 120
MluNI TGGCCA 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 177
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 72
SetI ASST 3 cut(s) 72, 104, 116
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 169
SgeI CNNG 8 cut(s) 24, 77, 83, 104, 115, 120, 157, 163
Sse9I AATT 2 cut(s) 6, 120
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 102
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 6, 120
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.