Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3982244 .. 3983068

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTGCTGAGCTTAGCTTTCTGGAGGCAGGGATTTTTCCTGACAATGGTTTTAGTTTGGAGCACATCGAGGGAACAAAGATTGGCGCGACTACGTATGATGACCAGGGACGAAGACACACCTCAGCTCGATCTTCTCACAGCAGGGAATCCAAACAACATCACACTTCTTTTGAATGCAACTGTGACAAGCATCATCTTTCATAAAAAAAGAAATGAGACAATAGTTAGAGGCATAAGATTCATTAAAAGCAACGGGAGTTCTTCGCAAACCCATGAAGCTTACCTCAACACGCAGAACAACTCGAAGAGTTCAACAGGCGATGTGATACTAGCAGCAAGGGCTTTAGGCAGCCCTCAAATTTTGTTGTTTAGTGGCATTGGCCCTCAGAAACACCTAAACAAGTTCAACATTCCAGTTGCAGTAAACTTAAAGAGCGTTGGAAAAGGAATGATAGACAATCCTTGCATTGCACTCCTAGCTGAGATAGCTGACGCGAAGCCCAAAAATTTCCCACCAGATTCTCCCAAAGTTATCGTCATTGCAGACAACTTCAAACTCGTAATTCAGGCATTGATTTTACCCATCAGCTTCAACGCAACAATAATGCCGATCGTTGGCAAACTTGCATTCCCAGAATCAGAAGGAGAGCTTAAGTTGGATAGCACCGACCCTCGGAAAAACCCTTCTGTCACATTCTGGCAAAGGAGAAAGATATGGCAGAATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

244

Amino Acids

27.02

Weight (kDa)

10.05

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	51 - 145	2.9e-07	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	88, 497
AcsI	RAATTY	2 cut(s)	360, 508
AfiI	CCNNNNNNNGG	3 cut(s)	46, 617, 675
AflII	CTTAAG	1 cut(s)	653
AgsI	TTSAA	5 cut(s)	175, 315, 409, 556, 595
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	12, 17, 127, 281, 482, 491, 591, 652
AluI	AGCT	8 cut(s)	12, 17, 127, 281, 482, 491, 591, 652
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	335, 351
ApoI	RAATTY	2 cut(s)	360, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	522, 554
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	347, 363
BccI	CCATC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	332, 479
BfrI	CTTAAG	1 cut(s)	653
BisI	GCNGC	2 cut(s)	336, 352
BlpI	GCTNAGC	2 cut(s)	8, 13
BlsI	GCNGC	2 cut(s)	337, 353
Bme1390I	CCNGG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	2 cut(s)	8, 13
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	105, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 617, 675
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	2 cut(s)	468, 540
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	105, 674
BseLI	CCNNNNNNNGG	3 cut(s)	46, 617, 675
BseMI	GCAATG	2 cut(s)	468, 540
BseMII	CTCAG	3 cut(s)	137, 401, 474
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	347, 363
Bsh1236I	CGCG	2 cut(s)	88, 497
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	46, 617, 675
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	3 cut(s)	181, 629, 730
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	130, 612
Bsp1720I	GCTNAGC	2 cut(s)	8, 13
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	136, 400, 475
BspFNI	CGCG	2 cut(s)	88, 497
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	2 cut(s)	468, 540
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	105, 674
BssMI	GATC	2 cut(s)	130, 612
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	95
BstDEI	CTNAG	5 cut(s)	8, 13, 123, 387, 483
BstFNI	CGCG	2 cut(s)	88, 497
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	133, 615
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	130, 612
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 479, 488
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSNI	TACGTA	1 cut(s)	95
BstUI	CGCG	2 cut(s)	88, 497
BstV1I	GCAGC	2 cut(s)	347, 363
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	503
CviAII	CATG	1 cut(s)	275
DdeI	CTNAG	5 cut(s)	8, 13, 123, 387, 483
DpnI	GATC	2 cut(s)	132, 614
DpnII	GATC	2 cut(s)	130, 612
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco105I	TACGTA	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	98, 204, 236, 276, 718
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	336, 352
Fsp4HI	GCNGC	2 cut(s)	336, 352
FspBI	CTAG	2 cut(s)	332, 479
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	336, 352
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	384
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	148, 240, 521, 638
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	390, 643, 678
Hpy188III	TCNNGA	2 cut(s)	22, 40
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	638, 696
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	179, 422, 468, 473, 545, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 479, 488
HpyF3I	CTNAG	5 cut(s)	8, 13, 123, 387, 483
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	130, 612
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	347, 363
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	332, 479
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	184, 691
MalI	GATC	2 cut(s)	132, 614
MboI	GATC	2 cut(s)	130, 612
MboII	GAAGA	4 cut(s)	125, 125, 255, 319
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	3 cut(s)	360, 508, 564
MmeI	TCCRAC	2 cut(s)	421, 639
MnlI	CCTC	8 cut(s)	18, 63, 132, 224, 296, 366, 396, 684
MseI	TTAA	3 cut(s)	246, 431, 654
MspCI	CTTAAG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	3 cut(s)	181, 629, 730
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	88, 497
MwoI	GCNNNNNNNGC	3 cut(s)	341, 479, 488
NdeII	GATC	2 cut(s)	130, 612
NlaIII	CATG	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	184, 691
PctI	GAATGC	3 cut(s)	181, 629, 730
PfeI	GAWTC	4 cut(s)	148, 240, 521, 638
PkrI	GCNGC	2 cut(s)	337, 353
Ple19I	CGATCG	1 cut(s)	615
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	246, 431, 654
SatI	GCNGC	2 cut(s)	336, 352
Sau3AI	GATC	2 cut(s)	130, 612
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SnaBI	TACGTA	1 cut(s)	95
Sse9I	AATT	3 cut(s)	360, 508, 564
SspMI	CTAG	2 cut(s)	332, 479
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	68, 129, 305
TasI	AATT	3 cut(s)	360, 508, 564
TfiI	GAWTC	4 cut(s)	148, 240, 521, 638
Tru1I	TTAA	3 cut(s)	246, 431, 654
Tru9I	TTAA	3 cut(s)	246, 431, 654
TseFI	GTSAC	2 cut(s)	184, 691
TseI	GCWGC	2 cut(s)	335, 351
Tsp45I	GTSAC	2 cut(s)	184, 691
TspDTI	ATGAA	3 cut(s)	191, 232, 291
Vha464I	CTTAAG	1 cut(s)	653
XapI	RAATTY	2 cut(s)	360, 508
XspI	CTAG	2 cut(s)	332, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.