Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4128083 .. 4128874

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAATTTACCGTAAGCGATTAAGCGCGAACACCAGTAAATTTACTTCCCGCCATTTTCTAGTAGATCCCATCTCAGAAGAAATCGATCTCTCCGACATAGCAAGGAAGCTCGACCTCGAAGACTCCAAGGACGTCATAAGACGAGCCGCCGAGCGCCTCCGTCTCTGCGACATCCGGTTCTACTCCTCCATAATCGGCGGTGAGGTTTGCAGAGCTGTGATTTGCTTAGAAATCGCCGCCACAAGATCCGGGCTCCTATTCGATAGGAAAAAGGCGATAACGTTGAGTGGGATGAACAAGCTGGATGTTAGAGAACTGGCAATTCAGTTTGGGTGTGTTCGGATCATTCCCCTTGTACAGAAGGCCTTGTCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

9.54

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	31 - 107	1.3e-13	Origin recognition complex subunit 6 (ORC6)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	52, 150, 201, 240
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	3 cut(s)	62, 243, 353
AcsI	RAATTY	2 cut(s)	6, 41
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	360
AluBI	AGCT	3 cut(s)	112, 218, 304
AluI	AGCT	3 cut(s)	112, 218, 304
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	62, 243, 353
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	6, 41
AspLEI	GCGC	2 cut(s)	29, 159
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	129
BccI	CCATC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	2 cut(s)	150, 240
BlsI	GCNGC	2 cut(s)	151, 241
Bme1390I	CCNGG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	177
Bse1I	ACTGG	2 cut(s)	36, 324
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	174, 300, 313
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	36, 324
BseRI	GAGGAG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	178, 252
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	67, 88, 248, 345
BspACI	CCGC	4 cut(s)	52, 150, 201, 240
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	62, 243, 353
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	36, 324
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	67, 88, 248, 345
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	14, 378
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	76, 229
BstF5I	GGATG	3 cut(s)	174, 300, 313
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	29, 159
BstKTI	GATC	4 cut(s)	70, 91, 251, 348
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	4 cut(s)	67, 88, 248, 345
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	67, 248
BstYI	RGATCY	2 cut(s)	67, 248
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	368
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	174, 300, 313
BtsIMutI	CAGTG	1 cut(s)	374
CfoI	GCGC	2 cut(s)	29, 159
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	359
CviJI	RGCY	6 cut(s)	112, 149, 218, 256, 304, 368
CviKI_1	RGCY	6 cut(s)	112, 149, 218, 256, 304, 368
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	76, 229
DpnI	GATC	4 cut(s)	69, 90, 250, 347
DpnII	GATC	4 cut(s)	67, 88, 248, 345
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	170
FaiI	YATR	3 cut(s)	101, 140, 194
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	150, 240
FokI	GGATG	3 cut(s)	161, 307, 320
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	150, 240
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	28, 158
GluI	GCNGC	2 cut(s)	150, 240
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	178, 252
HhaI	GCGC	2 cut(s)	29, 159
Hin1I	GRCGYC	1 cut(s)	135
Hin6I	GCGC	2 cut(s)	27, 157
HinP1I	GCGC	2 cut(s)	27, 157
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	178, 252
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	79, 97, 345
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	14, 378
HpyCH4IV	ACGT	2 cut(s)	135, 284
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	76, 229
HpySE526I	ACGT	2 cut(s)	135, 284
Hsp92I	GRCGYC	1 cut(s)	135
HspAI	GCGC	2 cut(s)	27, 157
Kzo9I	GATC	4 cut(s)	67, 88, 248, 345
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	5 cut(s)	49, 191, 265, 290, 305
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	135, 284
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	4 cut(s)	69, 90, 250, 347
MboI	GATC	4 cut(s)	67, 88, 248, 345
MboII	GAAGA	2 cut(s)	92, 134
MflI	RGATCY	2 cut(s)	67, 248
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	6, 41, 324
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	128, 170, 199, 199
MseI	TTAA	1 cut(s)	23
MspI	CCGG	2 cut(s)	178, 252
MspR9I	CCNGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	4 cut(s)	67, 88, 248, 345
NlaIV	GGNNCC	1 cut(s)	257
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	151, 241
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	67, 248
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	150, 240
Sau3AI	GATC	4 cut(s)	67, 88, 248, 345
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	114, 120, 138, 210, 220, 287, 306
Sse9I	AATT	3 cut(s)	6, 41, 324
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	4 cut(s)	52, 150, 201, 240
SspMI	CTAG	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	14, 378
TaiI	ACGT	2 cut(s)	138, 287
TaqI	TCGA	4 cut(s)	87, 114, 120, 264
TasI	AATT	3 cut(s)	6, 41, 324
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	2 cut(s)	152, 242
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	2 cut(s)	17, 311
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	381
XapI	RAATTY	2 cut(s)	6, 41
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.