Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4202946 .. 4203609

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTGGAGGGTCGGTCCTGCTTGCTTTCGAGGGTGTTTCCGAGCTTTTGCCAGCCTGAAAGCGAGTGGCCTTATATGACTTACCGCCGTCTCGAAGATATTGCCAACGGAAAGCGTCCATTGGGGTTCGACGGCAGCGAGGATGACGAAGAGCATCGGGAGAGGAAGTTGTGTAAGCTGTTGGATTGTTGTGACATGGTGGAGACTGAGATGAATCAGTCTTCGTGTGAGCAATCGGACGATCAGCAGCATTCTGGGGTTCCTTCAGATTCCGATAACCTTATACATAGGATTGGTAGGGATAACTCGATCAGCTGCCTAATTCGCTGTTCTAGGTCTGATTATGGTCTCATTGCCTCTTTGAACCAGAGCTTCCGCTCGTTAGTTAGGAGTGGGGAGCTCTATAAACTGAGGAGGCAGAATGATGTCACTGAGCACTGGATTTATTTCTCTTGCGACCTACTTGAATGGGAGGCCTTTGATCCCAACTACGGCAGGTGGATGCACTTGCCGAGGATGACTTCCAATGAATGTTTCATGTGTTCCGATAAGGAATCTTGCGCTGTGGGAACTGAGCTTCTTGTATTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0042579 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1

Protein Analysis

198

Amino Acids

22.88

Weight (kDa)

4.85

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	486
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	2 cut(s)	85, 376
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	364, 467
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	6 cut(s)	45, 178, 315, 372, 400, 577
AluI	AGCT	6 cut(s)	45, 178, 315, 372, 400, 577
Alw21I	GWGCWC	2 cut(s)	402, 438
Alw26I	GTCTC	3 cut(s)	95, 197, 353
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	2 cut(s)	68, 474
ApeKI	GCWGC	3 cut(s)	135, 247, 315
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	402, 438
BbvI	GCAGC	3 cut(s)	147, 259, 302
BceAI	ACGGC	3 cut(s)	72, 148, 508
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcoDI	GTCTC	3 cut(s)	95, 197, 353
BfaI	CTAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	486
BisI	GCNGC	3 cut(s)	136, 248, 316
BlsI	GCNGC	3 cut(s)	137, 249, 317
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	2 cut(s)	163, 492
BpiI	GAAGAC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	512
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	148, 507, 522
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	198, 401, 423, 564
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	147, 259, 302
BshFI	GGCC	2 cut(s)	70, 476
BsiHKAI	GWGCWC	2 cut(s)	402, 438
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	3 cut(s)	95, 197, 353
BsmBI	CGTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	70, 476
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	402, 438
Bsp143I	GATC	3 cut(s)	241, 309, 481
BspACI	CCGC	2 cut(s)	85, 376
BspANI	GGCC	2 cut(s)	70, 476
BspCNI	CTCAG	4 cut(s)	199, 402, 424, 565
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	3 cut(s)	241, 309, 481
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	23, 53
BstDEI	CTNAG	4 cut(s)	207, 410, 432, 573
BstF5I	GGATG	3 cut(s)	148, 507, 522
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	244, 312, 484
BstMAI	GTCTC	3 cut(s)	95, 197, 353
BstMBI	GATC	3 cut(s)	241, 309, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	147, 259, 302
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	70, 476
BtsCI	GGATG	3 cut(s)	148, 507, 522
BtsIMutI	CAGTG	2 cut(s)	429, 436
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	23, 53
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	104
CviAII	CATG	2 cut(s)	196, 538
CviJI	RGCY	9 cut(s)	45, 55, 70, 178, 315, 372, 400, 476, 577
CviKI_1	RGCY	9 cut(s)	45, 55, 70, 178, 315, 372, 400, 476, 577
DdeI	CTNAG	4 cut(s)	207, 410, 432, 573
DpnI	GATC	3 cut(s)	243, 311, 483
DpnII	GATC	3 cut(s)	241, 309, 481
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	199, 541
FaiI	YATR	8 cut(s)	75, 77, 197, 284, 288, 345, 405, 539
FatI	CATG	2 cut(s)	195, 537
Fnu4HI	GCNGC	3 cut(s)	136, 248, 316
FokI	GGATG	3 cut(s)	155, 514, 529
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	136, 248, 316
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	3 cut(s)	136, 248, 316
HaeIII	GGCC	2 cut(s)	70, 476
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	199, 541
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HinfI	GANTC	3 cut(s)	214, 269, 554
Hpy188I	TCNGA	6 cut(s)	42, 238, 268, 274, 340, 547
Hpy188III	TCNNGA	2 cut(s)	92, 158
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	207, 410, 432, 573
Hsp92II	CATG	2 cut(s)	199, 541
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	241, 309, 481
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	7 cut(s)	31, 65, 69, 240, 380, 424, 481
Lsp1109I	GCAGC	3 cut(s)	147, 259, 302
LweI	GCATC	2 cut(s)	163, 492
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	191, 427
MalI	GATC	3 cut(s)	243, 311, 483
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	3 cut(s)	241, 309, 481
MboII	GAAGA	3 cut(s)	107, 161, 213
MhlI	GDGCHC	2 cut(s)	402, 438
MluCI	AATT	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	8 cut(s)	24, 133, 156, 367, 405, 408, 466, 507
MspA1I	CMGCKG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	3 cut(s)	241, 309, 481
NlaIII	CATG	2 cut(s)	199, 541
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	191, 427
PaqCI	CACCTGC	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	214, 269, 554
PkrI	GCNGC	3 cut(s)	137, 249, 317
Psp124BI	GAGCTC	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	144
SatI	GCNGC	3 cut(s)	136, 248, 316
Sau3AI	GATC	3 cut(s)	241, 309, 481
Sau96I	GGNCC	1 cut(s)	15
SduI	GDGCHC	2 cut(s)	402, 438
SfaNI	GCATC	2 cut(s)	163, 492
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	321
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	85, 376
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	476
TaqI	TCGA	4 cut(s)	29, 93, 129, 308
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	214, 269, 554
TscAI	CASTG	2 cut(s)	436, 443
TseFI	GTSAC	2 cut(s)	191, 427
TseI	GCWGC	3 cut(s)	135, 247, 315
Tsp45I	GTSAC	2 cut(s)	191, 427
TspDTI	ATGAA	3 cut(s)	227, 526, 543
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	436, 443
VpaK11BI	GGWCC	1 cut(s)	15
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.