pycom16g06560

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
4236010 .. 4236939
930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGTCGAGCAGAAGATCCTCTCGGTCGAGGCAGTCGTCGAGCAGGAACAACAACAGTATCAGTGATGACCAGATCACTGATCTCGTATCCAAGTTACAGCAGCTTCTTCCTGAGATTCGCCCTAGGCGTTCCAACAAGAGACTTGCAATTATATTAGAAACTTACACAGAGAGGTGGATGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.21

Weight (kDa)

11.43

Isoelectric Point (pI)

140.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 21 - 48 3.3e-07 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 9
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 100
AspA2I CCTAGG 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BbvI GCAGC 1 cut(s) 112
BciVI GTATCC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 1 cut(s) 101
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 14, 72, 79
BspCNI CTCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 3 cut(s) 14, 72, 79
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 3 cut(s) 17, 75, 82
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 14, 72, 79
BstMCI CGRYCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 67, 75
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DdeI CTNAG 1 cut(s) 111
DpnI GATC 3 cut(s) 16, 74, 81
DpnII GATC 3 cut(s) 14, 72, 79
Eco130I CCWWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaiI YATR 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 14, 72, 79
LpnPI CCDG 3 cut(s) 28, 83, 123
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 93
MalI GATC 3 cut(s) 16, 74, 81
MboI GATC 3 cut(s) 14, 72, 79
MboII GAAGA 2 cut(s) 24, 98
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 21, 28, 165
NdeII GATC 3 cut(s) 14, 72, 79
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 124
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 14
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 3 cut(s) 14, 72, 79
SetI ASST 3 cut(s) 105, 176, 185
Sse9I AATT 1 cut(s) 147
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 3 cut(s) 5, 26, 38
TaqII GACCGA 1 cut(s) 12
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 2 cut(s) 67, 82
TseI GCWGC 1 cut(s) 100
TspRI CASTG 2 cut(s) 67, 82
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.