Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4244213 .. 4246795

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCTCTTTAAAATTGGGAAGAAGACGCCCTTTCATTCTTGCAGGATCTCTCATGATTTCAGTTTCCGTGGTGTTAATCGGGTTTTCTGCAGACGTTGGATACTTATTAGGAGATACAAAGGAGCATTGCAGCACATTCAAAGGTACCCGGACAAGGGCAGCCTTTGTCTTTATTATTGGATTTTGGTTGCTGGATCGATCGATATTGCCAACAATACAGTGCAGGGACCAGCTCGTGCTCTTCTGGCTGATCTAGCAGGCCCTGAGCAACGTAATACTGCAAATGCTGTGTTTTGCTCATGGATGGCCGTTGGTAACATCCTAGGATTTTCTGCTGGTGCAAGTGGAAATTGGCACAGATGGTTTCCTTTCCTTCTGAGTAGAGCTTGCTGTGAAGCCTGTGGAAATCTTAAAGCAGCATTTCTTATTGCAGTGATCTTTCTCACTTTGTGTACACTTGTTACAATGTATTTTGCTGAGGAGGTTCCGCTCACTACGTATCAACCGAACCCTTTATCAGATTCTGCTCCTTTATTGGATGATCCCCAACAAAATGGTCTTGAGCTTTCTAAGTTGAAGCGTGATAAGCAAGTTATCGATAATGCAAATGGAAGCAGAATTGACTATGAAAGGGATATAAATCTGAAGGAGGCCATCTCAAAAGTTGAGGAAGATAAGAATGGTGGTTTTAATGACGGACCTGGAGCAGTGTTAGTCAATCTGTTGACCAGTTTAAGGCATTTACCACCAGCAATGCATTCAGTGCTAATTGTTATGGCTCTTACATGGTTATCCTGGTTTCCATTCTTTCTTTTTGATACGGATTGGATGGGTAGGGAAGTATATCATGGGGATCCGAAAGGGAACTCAGCCAAAATACAAGCTTATCGATCAGGGTGTCAGAGAAGGTGCATTCGGTTTATTATTGAATTCAGTTGTTCTTGGCATCAGTTCTTTCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

322

Amino Acids

36.37

Weight (kDa)

8.94

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	69 - 271	3.2e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	490
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	5 cut(s)	53, 202, 536, 848, 861
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	929
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	146, 454
AfiI	CCNNNNNNNGG	3 cut(s)	154, 155, 735
AgsI	TTSAA	3 cut(s)	140, 577, 929
AjnI	CCWGG	2 cut(s)	700, 794
AluBI	AGCT	4 cut(s)	233, 386, 565, 884
AluI	AGCT	4 cut(s)	233, 386, 565, 884
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	5 cut(s)	53, 202, 536, 848, 861
AlwNI	CAGNNNCTG	2 cut(s)	263, 524
AoxI	GGCC	3 cut(s)	259, 306, 651
ApeKI	GCWGC	3 cut(s)	130, 159, 416
ApoI	RAATTY	1 cut(s)	929
Asp718I	GGTACC	1 cut(s)	144
AspA2I	CCTAGG	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	227, 260, 698
AsuC2I	CCSGG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	227, 698
AvrII	CCTAGG	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	142, 171, 428
BccI	CCATC	4 cut(s)	298, 354, 662, 823
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	702, 796
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	2 cut(s)	254, 323
BfmI	CTRYAG	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	131, 160, 417
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	3 cut(s)	132, 161, 418
Bme1390I	CCNGG	3 cut(s)	149, 702, 796
Bme18I	GGWCC	2 cut(s)	227, 698
BmgT120I	GGNCC	3 cut(s)	227, 260, 698
BmiI	GGNNCC	4 cut(s)	146, 228, 486, 855
BmrFI	CCNGG	3 cut(s)	149, 702, 796
BmsI	GCATC	1 cut(s)	955
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	2 cut(s)	264, 477
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	4 cut(s)	197, 201, 597, 889
BsaAI	YACGTR	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	67, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 155, 735
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	2 cut(s)	125, 759
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	702, 796
BseCI	ATCGAT	4 cut(s)	197, 201, 597, 889
BseDI	CCNNGG	2 cut(s)	67, 322
BseGI	GGATG	4 cut(s)	309, 318, 544, 834
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	3 cut(s)	154, 155, 735
BseMI	GCAATG	2 cut(s)	125, 759
BseMII	CTCAG	4 cut(s)	255, 368, 468, 882
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	142, 171, 428
BsgI	GTGCAG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	261, 308, 653
BshNI	GGYRCC	1 cut(s)	144
BshVI	ATCGAT	4 cut(s)	197, 201, 597, 889
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	3 cut(s)	154, 155, 735
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	2 cut(s)	757, 912
BsnI	GGCC	3 cut(s)	261, 308, 653
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	3 cut(s)	261, 308, 653
BspCNI	CTCAG	4 cut(s)	256, 369, 469, 881
BspDI	ATCGAT	4 cut(s)	197, 201, 597, 889
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	146, 228, 486, 855
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	5 cut(s)	53, 202, 536, 848, 861
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	490
BsrDI	GCAATG	2 cut(s)	125, 759
BsrGI	TGTACA	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	2 cut(s)	67, 322
BssMI	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	702, 796
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstAUI	TGTACA	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	259, 388
BstDEI	CTNAG	5 cut(s)	264, 377, 477, 570, 868
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	309, 318, 544, 834
BstKTI	GATC	8 cut(s)	48, 197, 201, 253, 438, 544, 856, 893
BstMBI	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 254, 586, 763
BstNI	CCWGG	2 cut(s)	702, 796
BstSCI	CCNGG	3 cut(s)	147, 700, 794
BstSFI	CTRYAG	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	142, 171, 428
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	2 cut(s)	45, 853
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	2 cut(s)	45, 853
Bsu15I	ATCGAT	4 cut(s)	197, 201, 597, 889
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	261, 308, 653
BsuTUI	ATCGAT	4 cut(s)	197, 201, 597, 889
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	309, 318, 544, 834
BtsI	GCAGTG	2 cut(s)	438, 714
BtsIMutI	CAGTG	4 cut(s)	225, 438, 714, 768
Cac8I	GCNNGC	2 cut(s)	259, 388
CaiI	CAGNNNCTG	2 cut(s)	263, 524
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	227, 260, 698
ClaI	ATCGAT	4 cut(s)	197, 201, 597, 889
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	145, 453
CviAII	CATG	4 cut(s)	53, 300, 786, 848
CviQI	GTAC	2 cut(s)	145, 453
DdeI	CTNAG	5 cut(s)	264, 377, 477, 570, 868
DpnI	GATC	8 cut(s)	47, 196, 200, 252, 437, 543, 855, 892
DpnII	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco105I	TACGTA	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	227, 698
Eco57I	CTGAAG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	700, 794
EcoT14I	CCWWGG	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	56, 303, 789, 851
FaiI	YATR	8 cut(s)	54, 301, 627, 638, 776, 787, 844, 849
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	52, 299, 785, 847
Fnu4HI	GCNGC	3 cut(s)	131, 160, 417
FokI	GGATG	4 cut(s)	305, 316, 551, 841
Fsp4HI	GCNGC	3 cut(s)	131, 160, 417
FspBI	CTAG	2 cut(s)	254, 323
GluI	GCNGC	3 cut(s)	131, 160, 417
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	3 cut(s)	261, 308, 653
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	56, 303, 789, 851
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	453, 455, 726
Hpy188I	TCNGA	5 cut(s)	378, 520, 645, 858, 903
Hpy188III	TCNNGA	2 cut(s)	53, 560
Hpy8I	GTNNAC	3 cut(s)	453, 455, 726
HpyAV	CCTTC	3 cut(s)	383, 640, 900
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	94, 271, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 254, 586, 763
HpyF3I	CTNAG	5 cut(s)	264, 377, 477, 570, 868
HpySE526I	ACGT	3 cut(s)	94, 271, 497
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	56, 303, 789, 851
KpnI	GGTACC	1 cut(s)	148
Kzo9I	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	122, 532, 704
Lsp1109I	GCAGC	3 cut(s)	142, 171, 428
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	2 cut(s)	254, 323
MaeII	ACGT	3 cut(s)	94, 271, 497
MaeIII	GTNAC	2 cut(s)	314, 460
MalI	GATC	8 cut(s)	47, 196, 200, 252, 437, 543, 855, 892
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
MboII	GAAGA	4 cut(s)	31, 34, 233, 683
MflI	RGATCY	2 cut(s)	45, 853
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	12, 349, 618, 768, 929, 961
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	472, 475, 643, 661
Mph1103I	ATGCAT	1 cut(s)	759
MseI	TTAA	5 cut(s)	9, 75, 411, 690, 734
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	149, 702, 796
Mva1269I	GAATGC	2 cut(s)	757, 912
MvaI	CCWGG	2 cut(s)	702, 796
MwoI	GCNNNNNNNGC	4 cut(s)	245, 254, 586, 763
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
NlaIII	CATG	4 cut(s)	56, 303, 789, 851
NlaIV	GGNNCC	4 cut(s)	146, 228, 486, 855
NsiI	ATGCAT	1 cut(s)	759
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PctI	GAATGC	2 cut(s)	757, 912
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	132, 161, 418
Ple19I	CGATCG	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	700, 794
PspGI	CCWGG	2 cut(s)	700, 794
PspN4I	GGNNCC	4 cut(s)	146, 228, 486, 855
PspPI	GGNCC	3 cut(s)	227, 260, 698
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	2 cut(s)	263, 524
PsuI	RGATCY	2 cut(s)	45, 853
PvuI	CGATCG	1 cut(s)	201
RsaI	GTAC	2 cut(s)	146, 454
RsaNI	GTAC	2 cut(s)	145, 453
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	9, 75, 411, 690, 734
SatI	GCNGC	3 cut(s)	131, 160, 417
Sau3AI	GATC	8 cut(s)	45, 194, 198, 250, 435, 541, 853, 890
Sau96I	GGNCC	3 cut(s)	227, 260, 698
ScrFI	CCNGG	3 cut(s)	149, 702, 796
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	227, 698
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SnaBI	TACGTA	1 cut(s)	498
Sse9I	AATT	6 cut(s)	12, 349, 618, 768, 929, 961
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	2 cut(s)	254, 323
StyD4I	CCNGG	3 cut(s)	147, 700, 794
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	3 cut(s)	97, 274, 500
TaqI	TCGA	4 cut(s)	197, 201, 597, 889
TasI	AATT	6 cut(s)	12, 349, 618, 768, 929, 961
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	5 cut(s)	9, 75, 411, 690, 734
Tru9I	TTAA	5 cut(s)	9, 75, 411, 690, 734
TscAI	CASTG	4 cut(s)	225, 438, 714, 768
TseI	GCWGC	3 cut(s)	130, 159, 416
TspDTI	ATGAA	2 cut(s)	23, 642
TspGWI	ACGGA	3 cut(s)	56, 711, 836
TspRI	CASTG	4 cut(s)	225, 438, 714, 768
VpaK11BI	GGWCC	2 cut(s)	227, 698
XapI	RAATTY	1 cut(s)	929
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	2 cut(s)	254, 323
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.