pycom16g06690

SNF1-related protein kinase regulatory subunit gamma-1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
4336382 .. 4336696
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAGGCACTTAATTTGTGTGACATTTTCTTTCAGGAAGCTCACTGTTAGGGACTTCATGAGCACCATCACGACGACCAGCGAAATTGGAAAAGTCATGCAACCAATTACATGCAAACTGGAGTCAACTCTTGGTAATCTGATTGAAAGTTTTGCTTCCAAGTCCGTTCATAGGATCCATGTAGTAGCTGGGGAGGAAGGCGAGGTTGTTGGTGTCGTTACACTCAGAGATGTGATCTCTTGCTTCATTTATGAACCACCAAACCACTTTGATAACTACATGGGGTTTGCGGTGAAGGAGATGTTGAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

6.4

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 30 - 81 2.5e-09 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AclWI GGATC 2 cut(s) 169, 182
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 146, 307
AluBI AGCT 2 cut(s) 40, 188
AluI AGCT 2 cut(s) 40, 188
Alw21I GWGCWC 1 cut(s) 65
AlwI GGATC 2 cut(s) 169, 182
AsuHPI GGTGA 1 cut(s) 304
BamHI GGATCC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 65
BccI CCATC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 174, 234
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 169, 182
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 174, 234
Bst4CI ACNGT 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 224
BstKTI GATC 2 cut(s) 177, 237
BstMBI GATC 2 cut(s) 174, 234
BstNSI RCATGY 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 42
CciI TCATGA 1 cut(s) 57
CviAII CATG 5 cut(s) 58, 97, 111, 179, 280
CviJI RGCY 2 cut(s) 40, 188
CviKI_1 RGCY 2 cut(s) 40, 188
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 176, 236
DpnII GATC 2 cut(s) 174, 234
FaeI CATG 5 cut(s) 61, 100, 114, 182, 283
FaiI YATR 7 cut(s) 59, 98, 112, 171, 180, 252, 281
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 57, 96, 110, 178, 279
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 140
Hin1II CATG 5 cut(s) 61, 100, 114, 182, 283
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 2 cut(s) 122, 307
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 141, 227
Hpy188III TCNNGA 3 cut(s) 34, 58, 70
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 191, 289
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 100, 114
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 5 cut(s) 61, 100, 114, 182, 283
Kzo9I GATC 2 cut(s) 174, 234
LpnPI CCDG 4 cut(s) 19, 91, 104, 174
MaeIII GTNAC 2 cut(s) 19, 217
MalI GATC 2 cut(s) 176, 236
MboI GATC 2 cut(s) 174, 234
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 12, 84, 105
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 187, 196
MseI TTAA 1 cut(s) 11
NdeII GATC 2 cut(s) 174, 234
NlaIII CATG 5 cut(s) 61, 100, 114, 182, 283
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 114
PagI TCATGA 1 cut(s) 57
PfeI GAWTC 1 cut(s) 307
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 174
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 2 cut(s) 174, 234
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 42, 190, 207
Sse9I AATT 3 cut(s) 12, 84, 105
SsiI CCGC 1 cut(s) 290
TaaI ACNGT 1 cut(s) 46
TasI AATT 3 cut(s) 12, 84, 105
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 46, 158, 235, 267
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.