pycom16g07710

Ribonuclease P protein subunit p25-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
5079871 .. 5080170
300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGATTAATTCTGTGCTTTTAAAAAATTGTAGGTCGGAAGAGATCGATCGTTACCAGAGAGTGGAGAAGCCGAGAGTGGAGACGCCGAGAGTGGAGACGCCTATCGATGAGAACGAGATTAGGATTACCAGTCAGGGCAGGATGCGCAACTACATCACCTACGCCATGACCCTGCTTCAGGTCTCTCTCTCCCTCTCCTTTATTTTTTTTCTTCCATTTTTTGTGTTTAATTTCTGCTTTCGGATGCATAGAATTGAAAAAAAAAATTTGAAAATAATGAAATTTTGTTGTGTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.98

Weight (kDa)

9.46

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 61
AcsI RAATTY 2 cut(s) 265, 281
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 2 cut(s) 83, 98
AfiI CCNNNNNNNGG 2 cut(s) 61, 178
AgsI TTSAA 2 cut(s) 257, 271
Alw26I GTCTC 3 cut(s) 74, 89, 187
ApoI RAATTY 2 cut(s) 265, 281
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 74, 89, 187
BmsI GCATC 2 cut(s) 132, 234
Bsa29I ATCGAT 2 cut(s) 45, 105
BsaHI GRCGYC 2 cut(s) 83, 98
BsaI GGTCTC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 178
Bse1I ACTGG 1 cut(s) 129
BseCI ATCGAT 2 cut(s) 45, 105
BseGI GGATG 2 cut(s) 147, 249
BseLI CCNNNNNNNGG 2 cut(s) 61, 178
BseNI ACTGG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 49
BshVI ATCGAT 2 cut(s) 45, 105
BsiEI CGRYCG 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 61, 178
BsmAI GTCTC 3 cut(s) 74, 89, 187
BsmBI CGTCTC 2 cut(s) 74, 89
Bso31I GGTCTC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 42, 46
BspDI ATCGAT 2 cut(s) 45, 105
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 129
BssMI GATC 2 cut(s) 42, 46
BssNI GRCGYC 2 cut(s) 83, 98
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 2 cut(s) 83, 98
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 147, 249
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 2 cut(s) 45, 49
BstMAI GTCTC 3 cut(s) 74, 89, 187
BstMBI GATC 2 cut(s) 42, 46
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 144
Bsu15I ATCGAT 2 cut(s) 45, 105
BsuTUI ATCGAT 2 cut(s) 45, 105
BtsCI GGATG 2 cut(s) 147, 249
CfoI GCGC 1 cut(s) 147
ClaI ATCGAT 2 cut(s) 45, 105
CseI GACGC 2 cut(s) 91, 106
CviAII CATG 1 cut(s) 166
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
DpnI GATC 2 cut(s) 44, 48
DpnII GATC 2 cut(s) 42, 46
DraI TTTAAA 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 249
Esp3I CGTCTC 2 cut(s) 74, 89
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 249, 298
FatI CATG 1 cut(s) 165
FokI GGATG 2 cut(s) 154, 256
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 1 cut(s) 146
HgaI GACGC 2 cut(s) 91, 106
HhaI GCGC 1 cut(s) 147
Hin1I GRCGYC 2 cut(s) 83, 98
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 37, 243
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
Hsp92I GRCGYC 2 cut(s) 83, 98
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 42, 46
LpnPI CCDG 6 cut(s) 68, 119, 124, 142, 164, 185
LweI GCATC 2 cut(s) 132, 234
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 44, 48
MboI GATC 2 cut(s) 42, 46
MboII GAAGA 2 cut(s) 50, 203
MluCI AATT 6 cut(s) 7, 25, 229, 252, 265, 281
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 3 cut(s) 6, 20, 228
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 42, 46
NlaIII CATG 1 cut(s) 169
NmeAIII GCCGAG 2 cut(s) 96, 111
NsbI TGCGCA 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 6
PvuI CGATCG 1 cut(s) 49
SaqAI TTAA 3 cut(s) 6, 20, 228
Sau3AI GATC 2 cut(s) 42, 46
SetI ASST 3 cut(s) 35, 161, 183
SfaNI GCATC 2 cut(s) 132, 234
Sse9I AATT 6 cut(s) 7, 25, 229, 252, 265, 281
TaqI TCGA 2 cut(s) 45, 105
TasI AATT 6 cut(s) 7, 25, 229, 252, 265, 281
Tru1I TTAA 3 cut(s) 6, 20, 228
Tru9I TTAA 3 cut(s) 6, 20, 228
TspDTI ATGAA 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 61
VspI ATTAAT 1 cut(s) 6
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 265, 281
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.