Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5342698 .. 5342985

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCACCCCCAGAAGTTCCAGCTGATGATGTGTTCCAGTCCACAAGGAAAGTCTCAACGCTCACTACTACTACTACAGGCTGCTCCAAGAGGGCATTTGTGACGTTTTTAGCTGGAGATGGTGATTATTTCAAAGGGGTTGTGGGTTTGGCTAAGGGCTTGCGCAAAGTTAGGAGTGAGTACGCTCTTGTGGTTGCGATATTACCGAACGTGCCAGAGGAGCACCGTGAGATTTTACGTTCTCAGGGTTGTATTGTTCATGAGATCGAACCTCTACTATGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

96

Amino Acids

10.38

Weight (kDa)

6.82

Isoelectric Point (pI)

67.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	4
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	23, 113
AluI	AGCT	2 cut(s)	23, 113
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	153, 243
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	5 cut(s)	23, 81, 113, 152, 159
CviKI_1	RGCY	5 cut(s)	23, 81, 113, 152, 159
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	153, 243
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	261, 280
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspI	TGCGCA	1 cut(s)	164
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	3 cut(s)	104, 210, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	153, 243
HpySE526I	ACGT	3 cut(s)	104, 210, 238
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	89, 220
LpnPI	CCDG	7 cut(s)	24, 33, 50, 63, 99, 228, 230
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	3 cut(s)	104, 210, 238
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	84, 211, 282
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	164
PagI	TCATGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	6 cut(s)	25, 107, 115, 213, 241, 274
SfcI	CTRYAG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	3 cut(s)	107, 213, 241
TaqI	TCGA	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.