pycom16g08790

Coilin N-terminus

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
5872412 .. 5872702
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGAAACTCATGCTGCTACGAGAGAAAATGGAAAGGCAAGTGCATGGGATGAAATCAACCAGGCATTTAATGCTAAGAAGGTAGAGCTGTCGCAGGAGGAGAATGGTTGGAGTAAAAACGATGGTTCGTTGAGGAGCTCATGGTCGTATAGGGGGTTGAGAGGTAGCGCGTTAGGTCCAGTAGTGGCTCGTTTGAGAGCGCAAGGGCAATAA

Protein Analysis

71

Amino Acids

7.7

Weight (kDa)

9.39

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 170
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 88, 138
AluI AGCT 2 cut(s) 88, 138
Alw21I GWGCWC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 113, 148
Bsh1236I CGCG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 170
BsrI ACTGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 2 cut(s) 170, 202
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 55
CfoI GCGC 2 cut(s) 170, 202
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 3 cut(s) 11, 45, 141
CviJI RGCY 3 cut(s) 88, 138, 188
CviKI_1 RGCY 3 cut(s) 88, 138, 188
DdeI CTNAG 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 3 cut(s) 14, 48, 144
FaiI YATR 4 cut(s) 12, 46, 142, 150
FatI CATG 3 cut(s) 10, 44, 140
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 2 cut(s) 169, 201
GluI GCNGC 1 cut(s) 15
HhaI GCGC 2 cut(s) 170, 202
Hin1II CATG 3 cut(s) 14, 48, 144
Hin6I GCGC 2 cut(s) 168, 200
HinP1I GCGC 2 cut(s) 168, 200
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 14, 48, 144
HspAI GCGC 2 cut(s) 168, 200
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 47, 74, 80, 192
MhlI GDGCHC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 91, 126, 155
MseI TTAA 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 14, 48, 144
PkrI GCNGC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 176
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 140
SetI ASST 5 cut(s) 84, 90, 140, 166, 178
SinI GGWCC 1 cut(s) 176
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 60
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.