Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6220139 .. 6223025

Gene Structure 2887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGAATGGAGATTGAAGTTGAAGTAATATCCAAAGAGATCATCAAACCATCTTCTCCAACCCCAAACCATCTCCACCATCACCAGCTCTCGTTTCTCGATCAATTAGCTCCCCATGCATACATGCAATTTATCTACTTTTACAGCTCCGACGGCGACGGCACCAAAACCTTCACTCAAATATCAGACATCCTCAAGACTTCTTTGTCCAAAGTCTTAACCCATTACTACCCGTTAGCCGGCCGAGTCAAACACAATCTCGTTGTTCACTGCAGTGACCAAGGCGTCCCATTCTTTGAAGCCAAAGTTAAATCCCAACTCCTTTCCGATGTGATCACCAACCCTCTTCTCTCTGAGTCTGACCAGAACAGATTTTTGCCCTTCAAGACAGCTGAAGCTACTGAAATACCCCTCGGTGTTCAACTCAGCGTGTTTGATTGTGGAGGATTTGCAATTGGCGCTTGTATATCCCACAGGATCGCTGATGCGTTGTCATATTTTATGTTCGTCAACAATTGGGCAGCTATTGCTAAGAATTGTAGCAATATTTTTGTTTGTCCAGATTTTTCTGCAGCCTCAGTTTTCCCACCAAGAAATGTGGAAGGGTATTTAGGGGTTTCTATCATCACCAAAAGGAAAGCAATCATAACCAGGAGGTTTGTGTTTGATGGGGCAAAGGTTGAGGCTTTAAGATCGAGATACCAAGAGAGCATGGAGTTTTCAAAAACCCATAAATCACCCTTCAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

251

Amino Acids

28.07

Weight (kDa)

8.53

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 237	3.2e-49	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	205, 284
AccB1I	GGYRCC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	17, 23, 299, 385, 422, 723, 745
AjnI	CCWGG	1 cut(s)	650
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	6 cut(s)	88, 110, 147, 392, 398, 524
AluI	AGCT	6 cut(s)	88, 110, 147, 392, 398, 524
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	521, 572
AspLEI	GCGC	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	74, 328, 619, 729
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	533, 584
BccI	CCATC	4 cut(s)	58, 78, 87, 662
BceAI	ACGGC	2 cut(s)	169, 175
BciT130I	CCWGG	1 cut(s)	652
BclI	TGATCA	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	271, 570
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	2 cut(s)	522, 573
BlsI	GCNGC	2 cut(s)	523, 574
Bme1390I	CCNGG	1 cut(s)	652
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	652
BmsI	GCATC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	280, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	280, 412
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	345, 439, 591
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	533, 584
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	39, 100, 333, 477, 692
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	346, 438, 590
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	2 cut(s)	275, 574
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	280, 412
BssMI	GATC	5 cut(s)	39, 100, 333, 477, 692
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	354, 425, 531, 577
BstF5I	GGATG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	5 cut(s)	42, 103, 336, 480, 695
BstMBI	GATC	5 cut(s)	39, 100, 333, 477, 692
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 153, 458, 527
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	271, 570
BstV1I	GCAGC	2 cut(s)	533, 584
BstZI	CGGCCG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	268, 280
BtsIMutI	CAGTG	2 cut(s)	268, 280
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	239
CseI	GACGC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	3 cut(s)	116, 124, 712
DdeI	CTNAG	4 cut(s)	354, 425, 531, 577
DpnI	GATC	5 cut(s)	41, 102, 335, 479, 694
DpnII	GATC	5 cut(s)	39, 100, 333, 477, 692
DrdI	GACNNNNNNGTC	2 cut(s)	205, 284
DseDI	GACNNNNNNGTC	2 cut(s)	205, 284
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	280
Eco52I	CGGCCG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	119, 127, 715
FaiI	YATR	9 cut(s)	117, 121, 125, 467, 496, 503, 647, 713, 732
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	115, 123, 711
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	522, 573
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	522, 573
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	2 cut(s)	522, 573
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	119, 127, 715
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	246, 356
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	4 cut(s)	74, 328, 619, 729
Hpy166II	GTNNAC	2 cut(s)	268, 511
Hpy188I	TCNGA	5 cut(s)	151, 187, 328, 355, 361
Hpy188III	TCNNGA	6 cut(s)	98, 196, 385, 560, 696, 745
Hpy8I	GTNNAC	2 cut(s)	268, 511
Hpy99I	CGWCG	2 cut(s)	155, 161
HpyAV	CCTTC	4 cut(s)	181, 391, 596, 751
HpyCH4V	TGCA	5 cut(s)	119, 127, 273, 452, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 153, 458, 527
HpyF3I	CTNAG	4 cut(s)	354, 425, 531, 577
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	119, 127, 715
HspAI	GCGC	1 cut(s)	459
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	39, 100, 333, 477, 692
LmnI	GCTCC	2 cut(s)	115, 152
LpnPI	CCDG	7 cut(s)	98, 253, 377, 460, 573, 637, 664
Lsp1109I	GCAGC	2 cut(s)	533, 584
LweI	GCATC	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	41, 102, 335, 479, 694
MboI	GATC	5 cut(s)	39, 100, 333, 477, 692
MboII	GAAGA	2 cut(s)	45, 338
MfeI	CAATTG	2 cut(s)	453, 514
MluCI	AATT	5 cut(s)	104, 128, 453, 514, 535
MlyI	GAGTC	2 cut(s)	255, 365
MmeI	TCCRAC	2 cut(s)	83, 174
MnlI	CCTC	7 cut(s)	203, 354, 422, 437, 586, 648, 676
Mph1103I	ATGCAT	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	239
MseI	TTAA	3 cut(s)	218, 309, 689
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	652
MunI	CAATTG	2 cut(s)	453, 514
MvaI	CCWGG	1 cut(s)	652
MwoI	GCNNNNNNNGC	4 cut(s)	116, 153, 458, 527
NaeI	GCCGGC	1 cut(s)	241
NdeII	GATC	5 cut(s)	39, 100, 333, 477, 692
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	119, 127, 715
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	523, 574
PleI	GAGTC	2 cut(s)	254, 364
PpsI	GAGTC	2 cut(s)	254, 364
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	1 cut(s)	163
PstI	CTGCAG	2 cut(s)	275, 574
PvuII	CAGCTG	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	218, 309, 689
SatI	GCNGC	2 cut(s)	522, 573
Sau3AI	GATC	5 cut(s)	39, 100, 333, 477, 692
SchI	GAGTC	2 cut(s)	255, 365
ScrFI	CCNGG	1 cut(s)	652
SetI	ASST	9 cut(s)	90, 112, 149, 173, 394, 400, 526, 659, 681
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	2 cut(s)	271, 570
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	104, 128, 453, 514, 535
SspI	AATATT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	2 cut(s)	99, 695
TasI	AATT	5 cut(s)	104, 128, 453, 514, 535
Tru1I	TTAA	3 cut(s)	218, 309, 689
Tru9I	TTAA	3 cut(s)	218, 309, 689
TscAI	CASTG	2 cut(s)	275, 280
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	521, 572
Tsp45I	GTSAC	1 cut(s)	275
TspRI	CASTG	2 cut(s)	275, 280
XceI	RCATGY	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.