Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6608758 .. 6609386

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTACTTGTCTTATAATTTTCTGTTTCAGTTCATTCTTCCAAAAAAGAGAGACGCAGACTACAGAGAGGACACGATAGAACTTTGGAACAATGTTTATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCCCTTGCGGACACCGTTGACCAAAACCAAATTTTTACAAACAGTCATGTCAATAAATTGATGGGCTTCTCCACAGGGCCAAGATCACGGTCTACTCACTGGAAGCAAACAGTCCTGTACCTGGAAGATGTGCTAACAGTATGTCAAGGAGAGTCAATTATCGGAACCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGACATAATGCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

6.71

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	17 - 62	4.4e-12	Arginine methyltransferase oligomerization subdomain
PRMT_C	PF22528	65 - 121	5.1e-17	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	2 cut(s)	5, 260
AfiI	CCNNNNNNNGG	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	130, 196
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	141, 307
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	141, 307
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	6 cut(s)	157, 185, 231, 253, 280, 316
BstC8I	GCNNGC	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	4, 259
CviAII	CATG	4 cut(s)	109, 133, 188, 310
CviJI	RGCY	6 cut(s)	102, 114, 131, 142, 207, 220
CviKI_1	RGCY	6 cut(s)	102, 114, 131, 142, 207, 220
CviQI	GTAC	2 cut(s)	4, 259
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	4 cut(s)	112, 136, 191, 313
FaiI	YATR	8 cut(s)	15, 99, 110, 134, 189, 283, 311, 353
FatI	CATG	4 cut(s)	108, 132, 187, 309
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	115
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	220
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	4 cut(s)	112, 136, 191, 313
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	293, 334
Hpy166II	GTNNAC	2 cut(s)	160, 234
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	160, 234
HpyCH4III	ACNGT	6 cut(s)	157, 185, 231, 253, 280, 316
HpyCH4V	TGCA	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	112, 136, 191, 313
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	201, 226, 248, 269, 275
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	126
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	2 cut(s)	29, 278
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	16, 171, 197, 297
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	4 cut(s)	112, 136, 191, 313
NlaIV	GGNNCC	2 cut(s)	141, 307
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	141, 307
PspPI	GGNCC	1 cut(s)	218
RsaI	GTAC	2 cut(s)	5, 260
RsaNI	GTAC	2 cut(s)	4, 259
RseI	CAYNNNNRTG	1 cut(s)	314
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	116, 264
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	16, 171, 197, 297
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	6 cut(s)	157, 185, 231, 253, 280, 316
TasI	AATT	4 cut(s)	16, 171, 197, 297
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.