Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6724543 .. 6725425

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATGTTGATTCTTCATTTCTCACTTGGAATGTGTTGAATGGTCTGCGTCTTAAACAAGAAAACGATGTTAGCATCAGGGGTAATTTCGTTGCTGGAGGAAATGATCTCCAATCCCAGTTCTCAAGGACCTGCGGCAGCCCTCTCCTTCGAGCCGGTGTTGAAACCCAATGCAAGCTTGATGCCCACCACGCCCTGTACAATCTGTCGGGTGTCGAGTCAAATATACCGAAACTTATTTCAGCTGGTATTATCAGTGGTCTCCAATCCCTTCTTGCGGACTCTGGTGACCAAATGTGGACAGAAAAATGTATAGCTGTTTTGATAAACTTGGGATCAAGTAGTTCTGCCAGAGATGAAATGATGTCGAATTCGAGTCTTATCACTGCCCTAGCAACAATTTTGGAGGCTGAACAACCCATTGAGCAGGAGCAAGCTGTCTCATGTCTGTATATGTTGTGTAACGGGAGCGAGAAATGCAGTCAGATGGTCCTCAAGGAAGGGGTGATTCCGGCGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

174

Amino Acids

18.62

Weight (kDa)

4.63

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	54 - 159	2e-07	ARMC5
ARM_PUB	PF25598	64 - 169	8.2e-07	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AciI	CCGC	2 cut(s)	135, 278
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	40, 164
AluBI	AGCT	4 cut(s)	178, 245, 317, 437
AluI	AGCT	4 cut(s)	178, 245, 317, 437
Alw26I	GTCTC	2 cut(s)	266, 445
AlwI	GGATC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	129, 490
AsuHPI	GGTGA	2 cut(s)	299, 517
AvaII	GGWCC	2 cut(s)	129, 490
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	266, 445
BfaI	CTAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	136, 139
BlsI	GCNGC	2 cut(s)	137, 140
Bme18I	GGWCC	2 cut(s)	129, 490
BmgT120I	GGNCC	2 cut(s)	129, 490
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	84, 172
BmuI	ACTGGG	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	109, 479
BsaI	GGTCTC	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	156, 512
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	266, 445
Bso31I	GGTCTC	1 cut(s)	266
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	106, 335
BspACI	CCGC	2 cut(s)	135, 278
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	2 cut(s)	106, 335
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	176, 435
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	109, 338
BstMAI	GTCTC	2 cut(s)	266, 445
BstMBI	GATC	2 cut(s)	106, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 477
BstPI	GGTNACC	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	262, 384
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	176, 435
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	129, 490
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	444
CviJI	RGCY	7 cut(s)	141, 155, 178, 245, 317, 410, 437
CviKI_1	RGCY	7 cut(s)	141, 155, 178, 245, 317, 410, 437
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	2 cut(s)	108, 337
DpnII	GATC	2 cut(s)	106, 335
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	129, 490
Eco91I	GGTNACC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	370
FaeI	CATG	1 cut(s)	447
FaiI	YATR	5 cut(s)	227, 314, 445, 453, 455
FatI	CATG	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	136, 139
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	136, 139
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	2 cut(s)	136, 139
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	2 cut(s)	156, 512
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	11, 218, 281, 376, 508
HpaII	CCGG	2 cut(s)	156, 512
HphI	GGTGA	2 cut(s)	299, 517
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	486
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	3 cut(s)	158, 281, 494
HpyCH4V	TGCA	2 cut(s)	174, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 477
Hsp92II	CATG	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	106, 335
LmnI	GCTCC	2 cut(s)	430, 468
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	84, 172
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	287, 461
MalI	GATC	2 cut(s)	108, 337
MboI	GATC	2 cut(s)	106, 335
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	3 cut(s)	85, 370, 399
MlyI	GAGTC	3 cut(s)	227, 275, 385
MnlI	CCTC	4 cut(s)	92, 153, 400, 503
MseI	TTAA	2 cut(s)	54, 520
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	156, 512
MwoI	GCNNNNNNNGC	2 cut(s)	191, 477
NdeII	GATC	2 cut(s)	106, 335
NlaIII	CATG	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	11, 508
PkrI	GCNGC	2 cut(s)	137, 140
PleI	GAGTC	3 cut(s)	226, 275, 384
PpsI	GAGTC	3 cut(s)	226, 275, 384
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	129, 490
PspPPI	RGGWCCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	54, 520
SatI	GCNGC	2 cut(s)	136, 139
Sau3AI	GATC	2 cut(s)	106, 335
Sau96I	GGNCC	2 cut(s)	129, 490
SchI	GAGTC	3 cut(s)	227, 275, 385
SetI	ASST	5 cut(s)	134, 180, 247, 319, 439
SfaNI	GCATC	2 cut(s)	84, 172
SinI	GGWCC	2 cut(s)	129, 490
SmlI	CTYRAG	2 cut(s)	124, 494
SmoI	CTYRAG	2 cut(s)	124, 494
Sse9I	AATT	3 cut(s)	85, 370, 399
SsiI	CCGC	2 cut(s)	135, 278
SspMI	CTAG	1 cut(s)	392
TaqI	TCGA	4 cut(s)	151, 216, 368, 374
TasI	AATT	3 cut(s)	85, 370, 399
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	11, 508
Tru1I	TTAA	2 cut(s)	54, 520
Tru9I	TTAA	2 cut(s)	54, 520
TscAI	CASTG	2 cut(s)	262, 391
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	6, 372
TspRI	CASTG	2 cut(s)	262, 391
VpaK11BI	GGWCC	2 cut(s)	129, 490
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.