pycom16g10700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
7367490 .. 7368843
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGATTGTGCAGAAAGAGAAAAGAGATGTATGTAAATCATATTTCTCAGTATTTGAAAAGATCAGAGCCCTAGTTGGGGTCCAACCTAAATGGGCCAGATTGAACTATATGGACAACGAAAAACCCAACGAATGCAAGAGGAGATCCAAAACGGAGAGCAAAAAGCAGGGGAGGAGGGAGAGGGAGGAGAGAGAGATGGCGGGTGCGTTTTGGGGGACGCGAGTGCTGGAGATAGTGAAGAAGCACGACTCCGGCGGTCTTGTTTGGAAGAGAATAAAGCTGACCACCACCCGTAAAGCCAACGCCAAGAAGCGCCTCCTCCGCGTTTGGCAGGTTTTGGCTGCCTGTGGAGTCTATTCTGTACTATACGGGTCTTTTCACCTCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L31

Protein Analysis

130

Amino Acids

15.17

Weight (kDa)

10.29

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccII CGCG 2 cut(s) 220, 324
AciI CCGC 3 cut(s) 200, 255, 322
AclWI GGATC 1 cut(s) 138
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 75, 76
AgsI TTSAA 2 cut(s) 56, 103
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 79, 93
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 190
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 79, 93
BmiI GGNNCC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 76
BseLI CCNNNNNNNGG 2 cut(s) 75, 76
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 4 cut(s) 154, 187, 200, 308
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 2 cut(s) 220, 324
BshFI GGCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 75, 76
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 60, 143
BspACI CCGC 3 cut(s) 200, 255, 322
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 2 cut(s) 220, 324
BspLI GGNNCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 138
BssMI GATC 2 cut(s) 60, 143
Bst6I CTCTTC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 46
BstFNI CGCG 2 cut(s) 220, 324
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 63, 146
BstMBI GATC 2 cut(s) 60, 143
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstUI CGCG 2 cut(s) 220, 324
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 1 cut(s) 95
BveI ACCTGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 79, 93
CseI GACGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 362
CviJI RGCY 5 cut(s) 68, 95, 280, 299, 341
CviKI_1 RGCY 5 cut(s) 68, 95, 280, 299, 341
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 62, 145
DpnII GATC 2 cut(s) 60, 143
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 70
FaiI YATR 6 cut(s) 31, 40, 108, 110, 367, 388
FaqI GGGAC 1 cut(s) 229
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 315
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 2 cut(s) 248, 351
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 10, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 1 cut(s) 46
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 60, 143
LpnPI CCDG 6 cut(s) 109, 152, 212, 265, 317, 358
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 71
MalI GATC 2 cut(s) 62, 145
MboI GATC 2 cut(s) 60, 143
MboII GAAGA 2 cut(s) 250, 280
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 70
MlyI GAGTC 2 cut(s) 242, 360
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 7 cut(s) 132, 165, 168, 174, 178, 326, 329
MspI CCGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 137
MvnI CGCG 2 cut(s) 220, 324
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 2 cut(s) 60, 143
NlaIV GGNNCC 1 cut(s) 80
PctI GAATGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 2 cut(s) 242, 359
PpsI GAGTC 2 cut(s) 242, 359
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 2 cut(s) 79, 93
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 60, 143
Sau96I GGNCC 2 cut(s) 79, 93
SchI GAGTC 2 cut(s) 242, 360
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 88, 282, 336, 384
SinI GGWCC 1 cut(s) 79
SsiI CCGC 3 cut(s) 200, 255, 322
SspMI CTAG 1 cut(s) 71
TatI WGTACW 1 cut(s) 361
TseI GCWGC 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.