pycom16g10720

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
7378734 .. 7380890
2157 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGAGATATTATATGGTGAGTCATTTCCCATTTCAGCTGAAGTTCTTGATTCGAGTTTTTGCCTCCCAATTGGAAAAGCTAAGTGAGAGAGAAGGAAAGGATGTCACTATTACAGCTTTCTCAAAAATGGTTGGCTATTCTCTACAGGCTGCTGAGATACTCGCTAAGGAAGGAATCAGTGCTGAGGTCATAAATTTGCGGTCAATTCGTCCTCTCGACAGGAAAACTATCAATGATTCAGTCAGGAAAACCAACAGACTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGTGCATCTGTTGTTGAGGATAGCTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGCGACTGGCTGTTCCTCAGGTCGAAGATATTGTTCGTGCAGCAAAGAGAGCATGCTACAGAGCTTCCTCATTGGCTGCAAGTGCTTAA

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

7.76

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transketolase_C PF02780 29 - 146 4e-42 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 290
AgeI ACCGGT 1 cut(s) 352
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 5 cut(s) 37, 79, 116, 333, 470
AluI AGCT 5 cut(s) 37, 79, 116, 333, 470
ApeKI GCWGC 4 cut(s) 149, 395, 446, 482
ApoI RAATTY 1 cut(s) 193
AsiGI ACCGGT 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 28, 274
AxyI CCTNAGG 1 cut(s) 423
BbvCI CCTCAGC 2 cut(s) 183, 285
BbvI GCAGC 4 cut(s) 136, 407, 458, 469
BfmI CTRYAG 2 cut(s) 143, 463
BisI GCNGC 4 cut(s) 150, 396, 447, 483
BlsI GCNGC 4 cut(s) 151, 397, 448, 484
BmsI GCATC 2 cut(s) 323, 337
Bpu10I CCTNAGC 3 cut(s) 165, 183, 285
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 264, 417
Bse21I CCTNAGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 4 cut(s) 144, 174, 299, 437
BseNI ACTGG 2 cut(s) 264, 417
BseXI GCAGC 4 cut(s) 136, 407, 458, 469
BseYI CCCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 465
BshTI ACCGGT 1 cut(s) 352
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 290
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 4 cut(s) 145, 175, 298, 436
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 2 cut(s) 264, 417
BssAI RCCGGY 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 6 cut(s) 80, 153, 165, 183, 285, 423
BstF5I GGATG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 455, 488
BstNSI RCATGY 1 cut(s) 462
BstSFI CTRYAG 2 cut(s) 143, 463
BstV1I GCAGC 4 cut(s) 136, 407, 458, 469
BstXI CCANNNNNNTGG 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 352
CspAI ACCGGT 1 cut(s) 352
CviAII CATG 3 cut(s) 290, 385, 459
DdeI CTNAG 6 cut(s) 80, 153, 165, 183, 285, 423
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 423
FaeI CATG 3 cut(s) 293, 388, 462
FaiI YATR 7 cut(s) 12, 14, 191, 291, 386, 393, 460
FatI CATG 3 cut(s) 289, 384, 458
Fnu4HI GCNGC 4 cut(s) 150, 396, 447, 483
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 4 cut(s) 150, 396, 447, 483
GluI GCNGC 4 cut(s) 150, 396, 447, 483
GsaI CCCAGC 1 cut(s) 372
HapII CCGG 1 cut(s) 353
Hin1II CATG 3 cut(s) 293, 388, 462
HinfI GANTC 4 cut(s) 19, 49, 174, 236
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 28, 274
Hpy188III TCNNGA 4 cut(s) 46, 215, 244, 344
HpyAV CCTTC 3 cut(s) 86, 164, 269
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 314, 350, 395, 446, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 488
HpyF3I CTNAG 6 cut(s) 80, 153, 165, 183, 285, 423
Hsp92II CATG 3 cut(s) 293, 388, 462
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 8 cut(s) 131, 205, 229, 245, 354, 366, 398, 410
Lsp1109I GCAGC 4 cut(s) 136, 407, 458, 469
LweI GCATC 2 cut(s) 323, 337
MaeIII GTNAC 2 cut(s) 103, 262
MboII GAAGA 2 cut(s) 284, 443
MfeI CAATTG 1 cut(s) 68
MluCI AATT 5 cut(s) 68, 193, 204, 363, 400
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 7 cut(s) 73, 178, 222, 294, 319, 432, 484
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 493
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 455, 488
NlaIII CATG 3 cut(s) 293, 388, 462
NmuCI GTSAC 2 cut(s) 103, 262
NspI RCATGY 1 cut(s) 462
PaeI GCATGC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 3 cut(s) 49, 174, 236
PinAI ACCGGT 1 cut(s) 352
PkrI GCNGC 4 cut(s) 151, 397, 448, 484
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 493
SatI GCNGC 4 cut(s) 150, 396, 447, 483
SchI GAGTC 1 cut(s) 28
SetI ASST 7 cut(s) 39, 81, 118, 189, 335, 429, 472
SfaNI GCATC 2 cut(s) 323, 337
SfcI CTRYAG 2 cut(s) 143, 463
SphI GCATGC 1 cut(s) 462
Sse9I AATT 5 cut(s) 68, 193, 204, 363, 400
SsiI CCGC 1 cut(s) 199
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 52, 216, 429
TasI AATT 5 cut(s) 68, 193, 204, 363, 400
TfiI GAWTC 3 cut(s) 49, 174, 236
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 2 cut(s) 103, 262
TseI GCWGC 4 cut(s) 149, 395, 446, 482
Tsp45I GTSAC 2 cut(s) 103, 262
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.