pycom16g10830

UPF0613 protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
7461911 .. 7463293
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGTGGCTAAGGTGTTCTCATTCTTCCCTTCAGAGACCACAAGTCCTCCCTCAGTCAGTTCAAGTCTTCTTCTCCCGTTCGTGGTTCTCCGGCGTCATCAGGGGCTGGTCGGAACGGTCCGGGTCTGTCAAGATGGGAGCAGACTCCCTTTCGGGCAGTTCCGGCGACAATTCCGGCCCCGTTGTGAGGAAGAATCAGTTCCGTGGCGTGCTATTCAACTACGGCCCCAAACCTATTCAGGTCTGTCAGTTTCTTATGTCAGTTTATGCTTTTTGTTTCTGGATTATGCTGCATTTGAGTAGTAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

10.2

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 81, 186
AgsI TTSAA 2 cut(s) 62, 217
AhdI GACNNNNNGTC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 105
AoxI GGCC 2 cut(s) 175, 223
ApeKI GCWGC 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 117, 176, 224
AsuC2I CCSGG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 238
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 28
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 117
BmeRI GACNNNNNGTC 1 cut(s) 41
BmgT120I GGNCC 3 cut(s) 117, 176, 224
BmiI GGNNCC 2 cut(s) 178, 226
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 186
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 81, 186
BseMII CTCAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 276
BshFI GGCC 2 cut(s) 177, 225
BsiSI CCGG 4 cut(s) 90, 120, 162, 174
BslI CCNNNNNNNGG 2 cut(s) 81, 186
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 177, 225
Bso31I GGTCTC 1 cut(s) 28
BspANI GGCC 2 cut(s) 177, 225
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 178, 226
BspTNI GGTCTC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 8, 51
BstDSI CCRYGG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 177, 225
BtgI CCRYGG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 209
CaiI CAGNNNCTG 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 117, 176, 224
CpoI CGGWCCG 1 cut(s) 117
CseI GACGC 1 cut(s) 82
CspI CGGWCCG 1 cut(s) 117
CviJI RGCY 4 cut(s) 7, 105, 177, 225
CviKI_1 RGCY 4 cut(s) 7, 105, 177, 225
DdeI CTNAG 2 cut(s) 8, 51
DriI GACNNNNNGTC 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 14
FaiI YATR 3 cut(s) 257, 267, 287
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
HaeIII GGCC 2 cut(s) 177, 225
HapII CCGG 4 cut(s) 90, 120, 162, 174
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
HinfI GANTC 2 cut(s) 143, 193
HpaII CCGG 4 cut(s) 90, 120, 162, 174
Hpy188I TCNGA 2 cut(s) 33, 112
Hpy188III TCNNGA 2 cut(s) 130, 280
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 8, 51
Hsp92I GRCGYC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 8 cut(s) 85, 91, 103, 133, 175, 187, 224, 265
Lsp1109I GCAGC 1 cut(s) 276
MboII GAAGA 4 cut(s) 15, 58, 61, 202
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 56, 60, 180
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 310
MspI CCGG 4 cut(s) 90, 120, 162, 174
MspR9I CCNGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 178, 226
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 178, 226
PspPI GGNCC 3 cut(s) 117, 176, 224
PstNI CAGNNNCTG 1 cut(s) 105
Rsr2I CGGWCCG 1 cut(s) 117
RsrII CGGWCCG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 290
Sau96I GGNCC 3 cut(s) 117, 176, 224
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 121
SetI ASST 3 cut(s) 14, 235, 243
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 117
TasI AATT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseI GCWGC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.