Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7600727 .. 7601224

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTATTTTGTATGCATCATCCCAGAAGTGGGAAGAAGCTGCATTTTATAGAAGAATGATGGCTGAAAGGAACTTGAGGAAAGAAATCGGATGCAGCTGGATTACATTTACCGTCAAGGGCAAAAAGCATCGGTTTATAGTGGGCGATCAGCACCATTCTCAGATAGAACAGATATACTCGAAACTGAAGGAGCTGAGCATTTCTTTCAGGGATGCTGAAGAGTCGTTTCTTACGGAGGAGGACGTAGTGAGCGGTTTTCCGGAAAGGAAAGAACAGCTTCTTCACCACAGTGAGAGACTTGCCATAGCATTTGGGCTTATTTCCGCAACAGGTGATGCCCCTATTGTGGTTTTTAAGAACATCAGGGCGTGCAATGATTGCCATGAGTTCGCAAAACATGTTTCTGTGGTAACGGGGCGTGCAATTGTTGTGAGTGATTCCGACAGATTCCATCACTTCAAGATTGGGGAGTGTTCTTGCAGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

166

Amino Acids

19.16

Weight (kDa)

7.12

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	89 - 165	1.1e-28	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	2 cut(s)	255, 327
AcuI	CTGAAG	2 cut(s)	209, 240
AfiI	CCNNNNNNNGG	3 cut(s)	30, 31, 349
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	463
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	4 cut(s)	41, 99, 196, 280
AluI	AGCT	4 cut(s)	41, 99, 196, 280
Alw26I	GTCTC	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	41, 96
Asp700I	GAANNNNTTC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	278, 347
BbvI	GCAGC	2 cut(s)	28, 108
BccI	CCATC	2 cut(s)	55, 462
BcoDI	GTCTC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	42, 97
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	2 cut(s)	43, 98
BmsI	GCATC	5 cut(s)	26, 83, 139, 205, 328
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 31, 349
Bse3DI	GCAATG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	262
BseGI	GGATG	3 cut(s)	20, 98, 220
BseLI	CCNNNNNNNGG	3 cut(s)	30, 31, 349
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	176, 188
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	28, 108
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	30, 31, 349
BsmAI	GTCTC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	255, 327
BspCNI	CTCAG	2 cut(s)	175, 189
BspEI	TCCGGA	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	382
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	115, 293
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	373, 423
BstDEI	CTNAG	2 cut(s)	162, 197
BstF5I	GGATG	3 cut(s)	20, 98, 220
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	28, 108
BtsCI	GGATG	3 cut(s)	20, 98, 220
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	373, 423
CviAII	CATG	2 cut(s)	386, 401
CviJI	RGCY	6 cut(s)	41, 65, 99, 196, 280, 319
CviKI_1	RGCY	6 cut(s)	41, 65, 99, 196, 280, 319
DdeI	CTNAG	2 cut(s)	162, 197
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	209, 240
EcoT22I	ATGCAT	1 cut(s)	19
FaeI	CATG	2 cut(s)	389, 404
FaiI	YATR	7 cut(s)	15, 51, 140, 178, 308, 387, 402
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	2 cut(s)	385, 400
Fnu4HI	GCNGC	2 cut(s)	42, 97
FokI	GGATG	3 cut(s)	7, 105, 227
Fsp4HI	GCNGC	2 cut(s)	42, 97
GluI	GCNGC	2 cut(s)	42, 97
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	389, 404
HinfI	GANTC	3 cut(s)	224, 440, 450
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	278, 347
Hpy188I	TCNGA	3 cut(s)	92, 165, 445
Hpy188III	TCNNGA	2 cut(s)	263, 463
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	115, 293
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	6 cut(s)	17, 44, 96, 375, 425, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	2 cut(s)	162, 197
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	389, 404
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	38, 85, 196, 276, 318, 352
Lsp1109I	GCAGC	2 cut(s)	28, 108
LweI	GCATC	5 cut(s)	26, 83, 139, 205, 328
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	1 cut(s)	148
MboII	GAAGA	4 cut(s)	47, 66, 233, 275
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	3 cut(s)	72, 232, 235
Mph1103I	ATGCAT	1 cut(s)	19
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	389, 404
NsiI	ATGCAT	1 cut(s)	19
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	291
PciI	ACATGT	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	440, 450
PkrI	GCNGC	2 cut(s)	43, 98
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	42, 97
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	233
SetI	ASST	6 cut(s)	43, 101, 198, 249, 282, 337
SfaNI	GCATC	5 cut(s)	26, 83, 139, 205, 328
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	2 cut(s)	255, 327
TaaI	ACNGT	2 cut(s)	115, 293
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	440, 450
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	41, 96
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	298
XceI	RCATGY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.