Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7732385 .. 7734146

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAAACGCTCGCTTCCTTCAGAAGCATCAGAGGAGAAAGAGAGGGAGGGTCGTCCCCACCACCATGATTTCCCTTCTGACTACGAATCTTCCTAGACGGAAGCTGGCATGTCAGCCATGGTTTCTGCTCTCACTCAAGATTGGAACCACCGAAGATCATGCTACCGTGAAACCAAACCCTACGTTCATCTCAGATTCATCACTCCTAGTCAAACAAGAACCCGACCGCTGTCAACCGGTTCAAGATCAAGAGGCATACTCGTACATGTGCCTGCGGCCCCATGTCTCCATCTACAAAAGTCTTACATGGAATCGAACTACTTGTAAGAAGGTGAAGAATGGAATGGAGAATATACATCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071497 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

123

Amino Acids

14.27

Weight (kDa)

9.92

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	229, 277
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	346
BccI	CCATC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	96, 209
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	148, 281
BmsI	GCATC	1 cut(s)	37
BoxI	GACNNNNGTC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	280
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	157, 247
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	229, 277
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	148, 281
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	157, 247
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	13, 108, 275
BstDEI	CTNAG	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	160, 250
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	157, 247
BstMCI	CGRYCG	1 cut(s)	229
BstNSI	RCATGY	2 cut(s)	114, 271
BstPAI	GACNNNNGTC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	119
Cac8I	GCNNGC	3 cut(s)	13, 108, 275
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	7 cut(s)	67, 111, 120, 161, 268, 284, 309
CviJI	RGCY	3 cut(s)	106, 118, 280
CviKI_1	RGCY	3 cut(s)	106, 118, 280
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	159, 249
DpnII	GATC	2 cut(s)	157, 247
Eco130I	CCWWGG	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	7 cut(s)	70, 114, 123, 164, 271, 287, 312
FaiI	YATR	9 cut(s)	68, 112, 121, 162, 259, 269, 285, 310, 356
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	7 cut(s)	66, 110, 119, 160, 267, 283, 308
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	2 cut(s)	96, 209
GluI	GCNGC	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	7 cut(s)	70, 114, 123, 164, 271, 287, 312
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	3 cut(s)	88, 197, 313
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	24, 33, 81, 196
Hpy188III	TCNNGA	3 cut(s)	139, 245, 251
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	29, 86, 325
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	7 cut(s)	70, 114, 123, 164, 271, 287, 312
Kzo9I	GATC	2 cut(s)	157, 247
LpnPI	CCDG	3 cut(s)	92, 252, 287
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	96, 209
MaeII	ACGT	1 cut(s)	185
MalI	GATC	2 cut(s)	159, 249
MboI	GATC	2 cut(s)	157, 247
MboII	GAAGA	3 cut(s)	83, 167, 349
MnlI	CCTC	4 cut(s)	27, 38, 42, 247
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	157, 247
NlaIII	CATG	7 cut(s)	70, 114, 123, 164, 271, 287, 312
NlaIV	GGNNCC	2 cut(s)	148, 281
NspI	RCATGY	2 cut(s)	114, 271
PciI	ACATGT	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	88, 197, 313
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	279
PscI	ACATGT	1 cut(s)	267
PshAI	GACNNNNGTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	148, 281
PspPI	GGNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	157, 247
Sau96I	GGNCC	1 cut(s)	279
SetI	ASST	3 cut(s)	108, 188, 336
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	229, 277
SspMI	CTAG	2 cut(s)	96, 209
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	316
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	88, 197, 313
TspDTI	ATGAA	2 cut(s)	178, 189
TspGWI	ACGGA	1 cut(s)	115
XceI	RCATGY	2 cut(s)	114, 271
XspI	CTAG	2 cut(s)	96, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.