pycom16g11310

ribosomal small subunit assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
7858203 .. 7859524
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGAAAATACATATCTCTATATTAGAATACCGTCTTGTCAAAACTCAAAAATTCATTTTATTAATATATAGTTCGTTACAAAATATATATGTATATATCAACCTTTCAGCCATTCATTTAAATTCGATCTTAATTATAAACCCTAAATCTCCTCTTACCAGCCATCGTCGCAAGCTCTCTCGCTCCCTAGAGTTTCTCTTTCGCGGCCGCTGCTCTTCTCTACGATCTTCGTTTCCAATCAAGATGGTGCTTCAGAACGATATTGATTTGCTTCACCCACCAGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGAGGCTCGTGCAGACCCCCAACTCTTTCTTCATGGATGTCAAGTGCCAGGGGTGCTTCAACATAACCACTGTGTTCAGTCACTCGCAAACAGTTGTGGTGTGTGGGAACTGCCAGACTGTGCTGTGCCAGCCTACCGGTGGTCGTGCCAGGCTCACTGAGGGTTGCTCTTTCAGGAGGAAAGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006915 GO:0006919 GO:0006950 GO:0006974 GO:0006978 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0008494 GO:0008630 GO:0008656 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010942 GO:0010948 GO:0010950 GO:0010952 GO:0012501 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016504 GO:0016505 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0023052 GO:0030162 GO:0030234 GO:0030330 GO:0030490 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042255 GO:0042274 GO:0042770 GO:0042771 GO:0042772 GO:0042886 GO:0042981 GO:0043028 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045182 GO:0045184 GO:0045727 GO:0045786 GO:0045862 GO:0045930 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090079 GO:0090150 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097190 GO:0097193 GO:0098772 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000112 GO:2000116 GO:2000134 GO:2001056
KEGG Pathways
Metabolic & Signaling
ko03010 ko04010 ko04014 ko05203 map03010 map04010 map04014 map05203
Pfam Domains
Protein Families
Ribosomal_S27e

Protein Analysis

168

Amino Acids

19.18

Weight (kDa)

10.05

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S27e PF01667 111 - 165 1.6e-26 Ribosomal protein S27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 204, 208
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 2 cut(s) 50, 121
AcuI CTGAAG 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 452
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 2 cut(s) 360, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 4 cut(s) 175, 284, 289, 310
AluI AGCT 4 cut(s) 175, 284, 289, 310
Alw21I GWGCWC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 2 cut(s) 50, 121
AseI ATTAAT 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 290
BanII GRGCYC 1 cut(s) 291
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 197
BccI CCATC 2 cut(s) 171, 238
BciT130I CCWGG 2 cut(s) 362, 463
BfaI CTAG 1 cut(s) 188
BisI GCNGC 3 cut(s) 205, 208, 211
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 206, 209, 212
Bme1390I CCNGG 2 cut(s) 362, 463
BmeT110I CYCGRG 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 362, 463
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 449
BseBI CCWGG 2 cut(s) 362, 463
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 276, 462
BseRI GAGGAG 1 cut(s) 141
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 207
BshTI ACCGGT 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 452
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 126, 224
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 2 cut(s) 204, 208
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 277, 463
BspFNI CGCG 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 2 cut(s) 126, 224
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 362, 463
Bst4CI ACNGT 4 cut(s) 32, 385, 406, 433
Bst6I CTCTTC 2 cut(s) 220, 290
BstC8I GCNNGC 2 cut(s) 173, 443
BstDEI CTNAG 2 cut(s) 285, 471
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 129, 227
BstMBI GATC 2 cut(s) 126, 224
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 5 cut(s) 168, 210, 316, 366, 442
BstNI CCWGG 2 cut(s) 362, 463
BstSCI CCNGG 2 cut(s) 360, 461
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 197
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 381, 468
Cac8I GCNNGC 2 cut(s) 173, 443
CciNI GCGGCCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 449
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 1 cut(s) 346
DdeI CTNAG 2 cut(s) 285, 471
DpnI GATC 2 cut(s) 128, 226
DpnII GATC 2 cut(s) 126, 224
DraI TTTAAA 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 220, 290
EarI CTCTTC 2 cut(s) 220, 290
Ecl136II GAGCTC 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 291
Eco52I CGGCCG 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 360, 461
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 1 cut(s) 349
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 205, 208, 211
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 3 cut(s) 205, 208, 211
FspBI CTAG 1 cut(s) 188
GluI GCNGC 3 cut(s) 205, 208, 211
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 450
Hin1II CATG 1 cut(s) 349
HpaII CCGG 1 cut(s) 450
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 241, 292, 313, 487
Hpy99I CGWCG 1 cut(s) 171
HpyCH4III ACNGT 4 cut(s) 32, 385, 406, 433
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 210, 316, 366, 442
HpyF3I CTNAG 2 cut(s) 285, 471
Hsp92II CATG 1 cut(s) 349
Kzo9I GATC 2 cut(s) 126, 224
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 75, 392
MalI GATC 2 cut(s) 128, 226
MboI GATC 2 cut(s) 126, 224
MboII GAAGA 4 cut(s) 207, 219, 307, 334
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 50, 121, 132
MnlI CCTC 5 cut(s) 162, 291, 309, 466, 483
MseI TTAA 3 cut(s) 62, 119, 131
MspA1I CMGCKG 2 cut(s) 210, 284
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 2 cut(s) 362, 463
MvaI CCWGG 2 cut(s) 362, 463
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 5 cut(s) 168, 210, 316, 366, 442
NdeII GATC 2 cut(s) 126, 224
NlaIII CATG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 392
NotI GCGGCCGC 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 3 cut(s) 206, 209, 212
PshBI ATTAAT 1 cut(s) 62
PsiI TTATAA 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 360, 461
PspGI CCWGG 2 cut(s) 360, 461
PvuII CAGCTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 62, 119, 131
SatI GCNGC 3 cut(s) 205, 208, 211
Sau3AI GATC 2 cut(s) 126, 224
ScrFI CCNGG 2 cut(s) 362, 463
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 105, 177, 286, 291, 312
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmiI ATTTAAAT 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 290, 311
SmoI CTYRAG 2 cut(s) 290, 311
Sse9I AATT 3 cut(s) 50, 121, 132
SsiI CCGC 2 cut(s) 204, 208
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 360, 461
SwaI ATTTAAAT 1 cut(s) 120
TaaI ACNGT 4 cut(s) 32, 385, 406, 433
TaqI TCGA 2 cut(s) 125, 291
TasI AATT 3 cut(s) 50, 121, 132
TauI GCSGC 2 cut(s) 207, 210
Tru1I TTAA 3 cut(s) 62, 119, 131
Tru9I TTAA 3 cut(s) 62, 119, 131
TscAI CASTG 2 cut(s) 388, 475
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 4 cut(s) 17, 43, 104, 334
TspRI CASTG 2 cut(s) 388, 475
VspI ATTAAT 1 cut(s) 62
XapI RAATTY 2 cut(s) 50, 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.