pycom16g11440

Pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
7960375 .. 7960812
438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGCCGAGGTACGCAGAAAATGTAAAACAGGAGATGGTCGATGAAGTTAGAGGAATGATTACAGACATGGATTTGAGACCAAATAAACCTTATACTTGGACAGAACTCGAAAACAAAATTCATGCGTTTGGGACGGGGGACGTAGCACACCGAAGATCACAGGGAATAGGCTTGGAGTTGCAGTGTTTGATGCAGAAAATGGAAGGCAAAGGACAGAGACCTGAATCGGATTTTAGTTTCCGTGATGTGGATGAAGAGCGTGGATGCTGGCCATTTCTTTTGGCCTCATCAGTACACAACCCGGGTGCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

5.32

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 2 cut(s) 11, 294
AfiI CCNNNNNNNGG 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 70, 211
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 2 cut(s) 269, 282
ApoI RAATTY 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 302, 303
AvaI CYCGRG 1 cut(s) 301
BalI TGGCCA 1 cut(s) 271
BccI CCATC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 302, 303
BcoDI GTCTC 2 cut(s) 70, 211
Bme1390I CCNGG 2 cut(s) 302, 303
BmeT110I CYCGRG 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 302, 303
BmsI GCATC 2 cut(s) 180, 254
BpuMI CCSGG 2 cut(s) 302, 303
BsaI GGTCTC 2 cut(s) 70, 211
BsaJI CCNNGG 2 cut(s) 5, 301
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 5, 301
BseGI GGATG 2 cut(s) 256, 269
BseLI CCNNNNNNNGG 1 cut(s) 247
BshFI GGCC 2 cut(s) 271, 284
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 2 cut(s) 145, 152
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 70, 211
BsmFI GGGAC 2 cut(s) 145, 152
BsnI GGCC 2 cut(s) 271, 284
Bso31I GGTCTC 2 cut(s) 70, 211
BsoBI CYCGRG 1 cut(s) 301
Bsp143I GATC 1 cut(s) 155
BspANI GGCC 2 cut(s) 271, 284
BspQI GCTCTTC 1 cut(s) 249
BspTNI GGTCTC 2 cut(s) 70, 211
BssECI CCNNGG 2 cut(s) 5, 301
BssMI GATC 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 269
BstF5I GGATG 2 cut(s) 256, 269
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 2 cut(s) 70, 211
BstMBI GATC 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 300, 301
BsuRI GGCC 2 cut(s) 271, 284
BtsCI GGATG 2 cut(s) 256, 269
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 269
Cfr9I CCCGGG 1 cut(s) 301
CseI GACGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 10, 293
CviAII CATG 2 cut(s) 67, 122
CviJI RGCY 3 cut(s) 171, 271, 284
CviKI_1 RGCY 3 cut(s) 171, 271, 284
CviQI GTAC 2 cut(s) 10, 293
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco31I GGTCTC 2 cut(s) 70, 211
Eco88I CYCGRG 1 cut(s) 301
FaeI CATG 2 cut(s) 70, 125
FaiI YATR 3 cut(s) 68, 93, 123
FaqI GGGAC 2 cut(s) 145, 152
FatI CATG 2 cut(s) 66, 121
FokI GGATG 2 cut(s) 263, 276
HaeIII GGCC 2 cut(s) 271, 284
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 70, 125
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 181, 193
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 70, 125
Kzo9I GATC 1 cut(s) 155
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 4 cut(s) 14, 146, 234, 253
LweI GCATC 2 cut(s) 180, 254
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 165, 266
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 271
MnlI CCTC 2 cut(s) 44, 295
Mox20I TGGCCA 1 cut(s) 271
MscI TGGCCA 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 271
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 302, 303
NciI CCSGG 2 cut(s) 302, 303
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 70, 125
NmeAIII GCCGAG 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 224
RsaI GTAC 2 cut(s) 11, 294
RsaNI GTAC 2 cut(s) 10, 293
SapI GCTCTTC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 302, 303
SetI ASST 4 cut(s) 11, 91, 144, 223
SfaNI GCATC 2 cut(s) 180, 254
SmaI CCCGGG 1 cut(s) 303
Sse9I AATT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 300, 301
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 39, 108
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 57, 110, 267
TspGWI ACGGA 1 cut(s) 230
TspMI CCCGGG 1 cut(s) 301
TspRI CASTG 1 cut(s) 188
XapI RAATTY 1 cut(s) 117
XmaI CCCGGG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.