Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8428177 .. 8430887

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCCAAGATGATCAGCAAACCGCTGTTGCTGACTTATTTTTACCTATTCATCTACATTCTGCTCTCGTCCGGTGTTATATTGTACAACAAGTGGGTTCTGTCTCCAAAATACTTCAATTTTCCATTACCCATAACACTTACGATGATTCATATGGGATTTTCTGGACTAGTAGCATTTTTTCTTGTCCGTGTTTTCAAGGTTGTAGCTCCCGTCAAAATGACATTTGAAATATATGCAACTTGTGTAATTCCAATCAGTGCCTTCTTTGCATCGAGTCTTTGGTTTGGAAACACTGCTTACTTGCATATTTCAGTGGCGTTCATCCAAATGCTCAAAGCTCTAATGCCAGTGGCTACTTTTATCATGGCTGTATTGTGTGGCACTGATAAAGCAAGGTGCGACGTGTTCACAAACGTGTTGCTGGTCAGTGTTGGGGTTGTCATTTCCTCATACGGGGAGATTCATTTTAATGTAGTTGGTACAGTTTACCAGGTTACGGGCATCTTTGCAGAAGCTCTCAGGCTGGTCTTGACACAAGTCCTTCTACAGAAGAAGGGCTTGACTCTAAATCCGATCGACCAGCTTGTACTATATTGCCCCATGCAGTTTTGTCTTCCTGTTTGTGCCTTGGTTGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

215

Amino Acids

23.89

Weight (kDa)

9.15

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	14 - 209	8.4e-13	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	86, 484, 591
AfiI	CCNNNNNNNGG	2 cut(s)	456, 499
AflIII	ACRYGT	2 cut(s)	405, 417
AgsI	TTSAA	3 cut(s)	118, 199, 230
AhlI	ACTAGT	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	492
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	209, 341, 518, 586
AluI	AGCT	4 cut(s)	209, 341, 518, 586
Alw26I	GTCTC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	608
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	281, 513
BoxI	GACNNNNGTC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 499
Bse1I	ACTGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	456, 499
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	456, 499
BsmAI	GTCTC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	12, 576
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	2 cut(s)	12, 576
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	15, 579
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	12, 576
BstMCI	CGRYCG	1 cut(s)	579
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	608
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	6 cut(s)	265, 294, 321, 357, 384, 436
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	85, 483, 590
CviAII	CATG	2 cut(s)	367, 604
CviJI	RGCY	8 cut(s)	209, 341, 356, 371, 518, 526, 561, 586
CviKI_1	RGCY	8 cut(s)	209, 341, 356, 371, 518, 526, 561, 586
CviQI	GTAC	3 cut(s)	85, 483, 590
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	2 cut(s)	14, 578
DpnII	GATC	2 cut(s)	12, 576
Eco130I	CCWWGG	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	370, 607
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	2 cut(s)	366, 603
FauNDI	CATATG	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	1 cut(s)	311
FspBI	CTAG	1 cut(s)	170
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	370, 607
HinfI	GANTC	4 cut(s)	148, 277, 463, 565
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	411, 490
Hpy188I	TCNGA	1 cut(s)	576
Hpy188III	TCNNGA	2 cut(s)	165, 532
Hpy8I	GTNNAC	2 cut(s)	411, 490
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	3 cut(s)	274, 550, 554
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	405, 417
HpyCH4V	TGCA	5 cut(s)	239, 272, 307, 512, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	2 cut(s)	405, 417
Hsp92II	CATG	2 cut(s)	370, 607
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 576
LmnI	GCTCC	1 cut(s)	214
LweI	GCATC	2 cut(s)	281, 513
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	405, 417
MaeIII	GTNAC	2 cut(s)	496, 637
MalI	GATC	2 cut(s)	14, 578
MboI	GATC	2 cut(s)	12, 576
MboII	GAAGA	2 cut(s)	565, 608
MluCI	AATT	2 cut(s)	118, 249
MlyI	GAGTC	2 cut(s)	286, 559
MnlI	CCTC	1 cut(s)	460
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	3 cut(s)	329, 416, 471
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	2 cut(s)	12, 576
NlaIII	CATG	2 cut(s)	370, 607
OliI	CACNNNNGTG	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	148, 463
Ple19I	CGATCG	1 cut(s)	579
PleI	GAGTC	2 cut(s)	285, 559
PpsI	GAGTC	2 cut(s)	285, 559
PshAI	GACNNNNGTC	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PvuI	CGATCG	1 cut(s)	579
RsaI	GTAC	3 cut(s)	86, 484, 591
RsaNI	GTAC	3 cut(s)	85, 483, 590
RseI	CAYNNNNRTG	3 cut(s)	329, 416, 471
SaqAI	TTAA	1 cut(s)	471
Sau3AI	GATC	2 cut(s)	12, 576
SchI	GAGTC	2 cut(s)	286, 559
ScrFI	CCNGG	1 cut(s)	494
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	281, 513
SfcI	CTRYAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	3 cut(s)	329, 416, 471
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	118, 249
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	2 cut(s)	408, 420
TaqI	TCGA	2 cut(s)	275, 579
TasI	AATT	2 cut(s)	118, 249
TatI	WGTACW	2 cut(s)	84, 589
TfiI	GAWTC	2 cut(s)	148, 463
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	6 cut(s)	265, 301, 321, 357, 391, 436
TspDTI	ATGAA	4 cut(s)	40, 140, 313, 455
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	6 cut(s)	265, 301, 321, 357, 391, 436
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.