Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8547381 .. 8548267

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACGAGTCTCAACTTCGATGACCAAGATGGGATACTGAGGACAATTTCGGATGCACCACCAACCCATTACACACTAAAAGTACAATCGATTTCGTTGCTCACCAAACATAACTTGGAGAAATATGAATCTGGGGATTTTGAAGCCGGAGGATACAAATGGTACAATCTTTTCTCTCTATTTCTGAGAACAAGTTCTTACTGTTCCTTTTCTCATAAGCTTTGCGTTAATTGCTATTGTTTCTTCTTTTTTCGGAGCTGCGTTAGAGTACTACAAATTGCTGTTTTGCTGCAGGAAACTGATTTTCTATCCAAATGGAAACAAGAACAGGAATGTGAAAGATCGAACATCTCTCTCTACTTGGTAATGTCTGGAGCAACTGCTCCCCAGATTTCTTCGAAAGTGTATGCTGTTTTCAGGTTGTTTATACTCGATCAGAACAACGGCAATTACTTCGTTCTTCAAGAACCAAAGGAAAGGAGGTTTTATGGGATGAAACTCGATTGGGGATTCGATCAATTTCTCTCCCACAAAGATTTCACTGAAGCTTCAAATGGATTTCTCATAGATGACACGTGTGTGTTGGGAGCAGAGGTTTTTCTTTCTAAAGAGAGAAGCAAAGGCAGAGGGGAGCGTCTATCAATGTTAAAGGATCGATCGCATCGACTGTTATGTACAAGAATACTTGGAGGATTGACAACGTATCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

238

Amino Acids

27.46

Weight (kDa)

8.07

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	111 - 199	2.4e-18	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	564
AcvI	CACGTG	1 cut(s)	576
AfaI	GTAC	4 cut(s)	84, 164, 270, 676
AflIII	ACRYGT	2 cut(s)	573, 575
AgsI	TTSAA	3 cut(s)	143, 464, 552
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	4 cut(s)	220, 258, 548, 711
AluI	AGCT	4 cut(s)	220, 258, 548, 711
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	258, 289
Asp700I	GAANNNNTTC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	398
BbrPI	CACGTG	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	245, 276
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 436, 470
BciVI	GTATCC	2 cut(s)	27, 146
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	712
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	2 cut(s)	27, 146
BisI	GCNGC	2 cut(s)	259, 290
BlsI	GCNGC	2 cut(s)	260, 291
BmcAI	AGTACT	1 cut(s)	270
BmsI	GCATC	2 cut(s)	43, 670
BpmI	CTGGAG	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	398
Bsa29I	ATCGAT	2 cut(s)	89, 655
BsaAI	YACGTR	1 cut(s)	576
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
BseCI	ATCGAT	2 cut(s)	89, 655
BseGI	GGATG	2 cut(s)	58, 498
BseMII	CTCAG	2 cut(s)	29, 176
BseXI	GCAGC	2 cut(s)	245, 276
Bsh1285I	CGRYCG	1 cut(s)	659
BshVI	ATCGAT	2 cut(s)	89, 655
BsiEI	CGRYCG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	5 cut(s)	341, 433, 514, 652, 656
BspCNI	CTCAG	2 cut(s)	30, 177
BspDI	ATCGAT	2 cut(s)	89, 655
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	674
BssMI	GATC	5 cut(s)	341, 433, 514, 652, 656
Bst4CI	ACNGT	2 cut(s)	203, 669
BstAUI	TGTACA	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	576
BstBI	TTCGAA	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	38, 185
BstF5I	GGATG	2 cut(s)	58, 498
BstKTI	GATC	5 cut(s)	344, 436, 517, 655, 659
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	5 cut(s)	341, 433, 514, 652, 656
BstMCI	CGRYCG	1 cut(s)	659
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	245, 276
Bsu15I	ATCGAT	2 cut(s)	89, 655
BsuI	GTATCC	2 cut(s)	27, 146
BsuTUI	ATCGAT	2 cut(s)	89, 655
BtsCI	GGATG	2 cut(s)	58, 498
BtsIMutI	CAGTG	1 cut(s)	540
ClaI	ATCGAT	2 cut(s)	89, 655
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	4 cut(s)	83, 163, 269, 675
CviJI	RGCY	5 cut(s)	146, 220, 258, 548, 711
CviKI_1	RGCY	5 cut(s)	146, 220, 258, 548, 711
CviQI	GTAC	4 cut(s)	83, 163, 269, 675
DdeI	CTNAG	2 cut(s)	38, 185
DpnI	GATC	5 cut(s)	343, 435, 516, 654, 658
DpnII	GATC	5 cut(s)	341, 433, 514, 652, 656
Eco57I	CTGAAG	1 cut(s)	564
Eco72I	CACGTG	1 cut(s)	576
FaiI	YATR	8 cut(s)	111, 126, 216, 408, 428, 489, 566, 673
Fnu4HI	GCNGC	2 cut(s)	259, 290
FokI	GGATG	2 cut(s)	65, 505
Fsp4HI	GCNGC	2 cut(s)	259, 290
FspBI	CTAG	1 cut(s)	712
GluI	GCNGC	2 cut(s)	259, 290
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	623
HindIII	AAGCTT	2 cut(s)	218, 546
HinfI	GANTC	3 cut(s)	7, 128, 510
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	52, 186, 255, 438
Hpy188III	TCNNGA	2 cut(s)	372, 464
HpyCH4III	ACNGT	2 cut(s)	203, 669
HpyCH4IV	ACGT	2 cut(s)	575, 701
HpyCH4V	TGCA	2 cut(s)	56, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	38, 185
HpySE526I	ACGT	2 cut(s)	575, 701
Kzo9I	GATC	5 cut(s)	341, 433, 514, 652, 656
LmnI	GCTCC	5 cut(s)	255, 374, 388, 587, 631
LpnPI	CCDG	7 cut(s)	117, 160, 278, 314, 357, 401, 403
Lsp1109I	GCAGC	2 cut(s)	245, 276
LweI	GCATC	2 cut(s)	43, 670
MaeI	CTAG	1 cut(s)	712
MaeII	ACGT	2 cut(s)	575, 701
MalI	GATC	5 cut(s)	343, 435, 516, 654, 658
MboI	GATC	5 cut(s)	341, 433, 514, 652, 656
MboII	GAAGA	3 cut(s)	235, 387, 452
MluCI	AATT	5 cut(s)	45, 229, 276, 448, 518
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	33, 143, 474, 586, 620, 683
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	228, 647
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	5 cut(s)	341, 433, 514, 652, 656
NspV	TTCGAA	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	128, 510
PkrI	GCNGC	2 cut(s)	260, 291
Ple19I	CGATCG	1 cut(s)	659
PleI	GAGTC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	576
PmlI	CACGTG	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	659
RsaI	GTAC	4 cut(s)	84, 164, 270, 676
RsaNI	GTAC	4 cut(s)	83, 163, 269, 675
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	228, 647
SatI	GCNGC	2 cut(s)	259, 290
Sau3AI	GATC	5 cut(s)	341, 433, 514, 652, 656
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	1 cut(s)	16
SetI	ASST	9 cut(s)	222, 260, 422, 485, 550, 578, 597, 704, 713
SfaNI	GCATC	2 cut(s)	43, 670
SfcI	CTRYAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	5 cut(s)	45, 229, 276, 448, 518
SspMI	CTAG	1 cut(s)	712
TaaI	ACNGT	2 cut(s)	203, 669
TaiI	ACGT	2 cut(s)	578, 704
TaqI	TCGA	9 cut(s)	18, 89, 344, 398, 432, 501, 513, 655, 664
TasI	AATT	5 cut(s)	45, 229, 276, 448, 518
TatI	WGTACW	3 cut(s)	82, 268, 674
TfiI	GAWTC	2 cut(s)	128, 510
Tru1I	TTAA	2 cut(s)	228, 647
Tru9I	TTAA	2 cut(s)	228, 647
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	2 cut(s)	258, 289
TspDTI	ATGAA	2 cut(s)	141, 509
TspRI	CASTG	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	1 cut(s)	712
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.