Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8553386 .. 8555188

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCCCAAATTCCCAGGGTTGCACTGCAGAAAAGATATCAATTATGCAGCCGCAATAGTAGCGACGAGGAATATGCAAAGAGTCCTCGGAGATACGCTTCAACCAAGTTCAACGAAATCGGGTTTTCTAGTAGACGGGGACTACGGGATTTCGACCGACAGGAATCGGCGATGATCGCAAACCTAGTGTTGCTGAGAACATTTCAACAGGAGCGGCTCAACAACAATGGGTCAAAAAACTGGGTTGGTTCGCAGACGGATTCGAGAGTTTCGTCTCTCGCAGCAGCAAAATTTCTAAGTTGGGTTTCAATTCGTGGGTACGTGATGCAGCAGTGGATCGTGGCGAGTGGATGCAAGGATCGGTTCGATGAACTTCGGTCAGCAACGACGGCATCGCTCGCTGGTCGGACGGACACTCTACACAACTGGCTGTGTGGTTGGTGGTTGTCAATTGACTCGAATCACCCCGCGAGAACAGAATCCCCCCCGAAAAAAAAAAAAAAAAAAAATCTCATATCTTCCTTCTTCCTTTCACCGCTAACCCACCTGCAAGTCCAAGCCACCGACCAAGCCTTCGCATCCGTCATCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTTTAGATTTACTAAAGGACTTGCTTGTAACTCTGGCCGTTTCCTCCATAATTCCACACCAGCTCCCCAAAATTTCAAAATCCAAGCGAATCCCATTTCTGGGAAATGTTAATATGGTGCTCTCCAACGTTACAATCTATGAAATCGATGTGGGTTCGTTGCGTTTCGAGCTGGGAGACAACAGAATCGCAGTTATTGATTCTGGGGTCACCTGCAATCTGAATATGAATTGGCACTATTCTTACACTACTTGGAGTGCTCCTATTGTTGTTTTAGATGAAAGTCGTGCTTCGATTCAGAAGCAATCAAAAACCAAAACAATAAAATTCAAAACTTTCCCACAAAAGGAAATTTCCCGAAAATCCCATCTTACGGAATCGGTACTTCCAAAACACGAGAATGCTGCTGGAGAAAAGTCTGCTGCATCAAAGCTTGTTACTGCTGCTGCTTCAGAGAGAGAAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

364

Amino Acids

40.98

Weight (kDa)

10.01

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	208 - 290	1.3e-06	LBP / BPI / CETP family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	555, 842
Acc36I	ACCTGC	2 cut(s)	555, 842
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	133
AccII	CGCG	1 cut(s)	470
AciI	CCGC	4 cut(s)	52, 214, 468, 536
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	2 cut(s)	344, 366
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	6 cut(s)	9, 290, 693, 947, 972, 1086
AcuI	CTGAAG	1 cut(s)	1056
AfaI	GTAC	2 cut(s)	320, 1005
AfiI	CCNNNNNNNGG	4 cut(s)	721, 722, 967, 994
AgsI	TTSAA	7 cut(s)	102, 112, 206, 309, 595, 699, 952
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	685, 793, 1054
AluI	AGCT	3 cut(s)	685, 793, 1054
Alw21I	GWGCWC	2 cut(s)	744, 883
Alw26I	GTCTC	2 cut(s)	279, 792
AlwI	GGATC	2 cut(s)	344, 366
AoxI	GGCC	2 cut(s)	3, 657
ApeKI	GCWGC	8 cut(s)	48, 281, 284, 328, 1025, 1043, 1064, 1067
ApoI	RAATTY	6 cut(s)	9, 290, 693, 947, 972, 1086
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	455, 525, 823
BauI	CACGAG	1 cut(s)	1016
Bbv12I	GWGCWC	2 cut(s)	744, 883
BbvI	GCAGC	8 cut(s)	60, 293, 296, 340, 1012, 1030, 1051, 1054
BccI	CCATC	1 cut(s)	996
BceAI	ACGGC	2 cut(s)	405, 644
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 1007, 1041
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	279, 792
BfaI	CTAG	2 cut(s)	129, 185
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	2 cut(s)	555, 842
Bme1390I	CCNGG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	5 cut(s)	315, 341, 401, 587, 1055
BmuI	ACTGGG	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	14, 15, 86
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	4 cut(s)	721, 722, 967, 994
Bse1I	ACTGG	2 cut(s)	245, 431
BseBI	CCWGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	14, 15, 86
BseGI	GGATG	2 cut(s)	356, 578
BseLI	CCNNNNNNNGG	4 cut(s)	721, 722, 967, 994
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	245, 431
BseXI	GCAGC	8 cut(s)	60, 293, 296, 340, 1012, 1030, 1051, 1054
BseYI	CCCAGC	1 cut(s)	793
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	5, 659
BshVI	ATCGAT	1 cut(s)	768
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	744, 883
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	4 cut(s)	721, 722, 967, 994
BsmAI	GTCTC	2 cut(s)	279, 792
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	1027
BsnI	GGCC	2 cut(s)	5, 659
Bsp1286I	GDGCHC	2 cut(s)	744, 883
Bsp143I	GATC	3 cut(s)	174, 336, 358
BspACI	CCGC	4 cut(s)	52, 214, 468, 536
BspANI	GGCC	2 cut(s)	5, 659
BspCNI	CTCAG	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	470
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	2 cut(s)	555, 842
BspPI	GGATC	2 cut(s)	344, 366
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	245, 431
BssECI	CCNNGG	3 cut(s)	14, 15, 86
BssMI	GATC	3 cut(s)	174, 336, 358
BssSI	CACGAG	1 cut(s)	1016
Bst2BI	CACGAG	1 cut(s)	1016
Bst2UI	CCWGG	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	194, 296
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	2 cut(s)	356, 578
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	3 cut(s)	177, 339, 361
BstMAI	GTCTC	2 cut(s)	279, 792
BstMBI	GATC	3 cut(s)	174, 336, 358
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 176, 389, 398, 790
BstNI	CCWGG	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	8 cut(s)	60, 293, 296, 340, 1012, 1030, 1051, 1054
Bsu15I	ATCGAT	1 cut(s)	768
BsuRI	GGCC	2 cut(s)	5, 659
BsuTUI	ATCGAT	1 cut(s)	768
BtgZI	GCGATG	2 cut(s)	185, 378
BtsCI	GGATG	2 cut(s)	356, 578
BtsI	GCAGTG	2 cut(s)	23, 338
BtsIMutI	CAGTG	2 cut(s)	23, 338
BveI	ACCTGC	2 cut(s)	555, 842
Cac8I	GCNNGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	319, 1004
CviQI	GTAC	2 cut(s)	319, 1004
DdeI	CTNAG	2 cut(s)	194, 296
DpnI	GATC	3 cut(s)	176, 338, 360
DpnII	GATC	3 cut(s)	174, 336, 358
EaeI	YGGCCR	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	1056
Eco91I	GGTNACC	1 cut(s)	829
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	279
FaiI	YATR	7 cut(s)	46, 75, 515, 671, 737, 762, 848
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FaqI	GGGAC	1 cut(s)	153
FauI	CCCGC	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	133
FokI	GGATG	2 cut(s)	363, 565
FspBI	CTAG	2 cut(s)	129, 185
GsaI	CCCAGC	1 cut(s)	797
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	5, 659
HindIII	AAGCTT	1 cut(s)	1052
HphI	GGTGA	3 cut(s)	455, 525, 823
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	5 cut(s)	90, 408, 843, 921, 1075
Hpy188III	TCNNGA	2 cut(s)	264, 978
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	2 cut(s)	68, 391
HpyAV	CCTTC	2 cut(s)	532, 583
HpyCH4IV	ACGT	2 cut(s)	321, 750
HpyCH4V	TGCA	9 cut(s)	23, 28, 48, 77, 328, 354, 550, 837, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 176, 389, 398, 790
HpyF3I	CTNAG	2 cut(s)	194, 296
HpySE526I	ACGT	2 cut(s)	321, 750
Kzo9I	GATC	3 cut(s)	174, 336, 358
LmnI	GCTCC	3 cut(s)	211, 690, 886
Lsp1109I	GCAGC	8 cut(s)	60, 293, 296, 340, 1012, 1030, 1051, 1054
LweI	GCATC	5 cut(s)	315, 341, 401, 587, 1055
MaeI	CTAG	2 cut(s)	129, 185
MaeII	ACGT	2 cut(s)	321, 750
MaeIII	GTNAC	4 cut(s)	649, 751, 829, 1057
MalI	GATC	3 cut(s)	176, 338, 360
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	174, 336, 358
MboII	GAAGA	3 cut(s)	510, 517, 583
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	744, 883
MlyI	GAGTC	2 cut(s)	91, 449
MmeI	TCCRAC	2 cut(s)	386, 771
MnlI	CCTC	3 cut(s)	61, 96, 676
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	1020
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	5 cut(s)	60, 176, 389, 398, 790
NdeII	GATC	3 cut(s)	174, 336, 358
NmuCI	GTSAC	1 cut(s)	829
PaqCI	CACCTGC	2 cut(s)	555, 842
PasI	CCCWGGG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	1027
PfeI	GAWTC	9 cut(s)	164, 260, 460, 479, 711, 807, 821, 916, 998
PleI	GAGTC	2 cut(s)	90, 449
PpsI	GAGTC	2 cut(s)	90, 449
Ppu21I	YACGTR	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	829
PspFI	CCCAGC	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	320, 1005
RsaNI	GTAC	2 cut(s)	319, 1004
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	1 cut(s)	732
Sau3AI	GATC	3 cut(s)	174, 336, 358
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	91, 449
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	744, 883
SetI	ASST	8 cut(s)	186, 324, 549, 687, 753, 795, 836, 1056
SfaNI	GCATC	5 cut(s)	315, 341, 401, 587, 1055
SfcI	CTRYAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SsiI	CCGC	4 cut(s)	52, 214, 468, 536
SspMI	CTAG	2 cut(s)	129, 185
StyD4I	CCNGG	1 cut(s)	14
TaiI	ACGT	2 cut(s)	324, 753
TaqI	TCGA	7 cut(s)	153, 263, 366, 458, 768, 789, 914
TaqII	GACCGA	2 cut(s)	171, 366
TauI	GCSGC	2 cut(s)	54, 217
TfiI	GAWTC	9 cut(s)	164, 260, 460, 479, 711, 807, 821, 916, 998
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	2 cut(s)	30, 338
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	8 cut(s)	48, 281, 284, 328, 1025, 1043, 1064, 1067
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	4 cut(s)	384, 777, 863, 915
TspGWI	ACGGA	4 cut(s)	272, 425, 571, 1010
TspRI	CASTG	2 cut(s)	30, 338
XapI	RAATTY	6 cut(s)	9, 290, 693, 947, 972, 1086
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	2 cut(s)	129, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.