pycom16g12320

ATP-citrate synthase alpha chain protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
8655540 .. 8658060
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGTCTAAAGAACACAAGTGGCGAGAAGTGGCACGTGGCAGGACTATTTCCACGCGTGTGACTTTACAATCTTATCCAACTGTACACACTCATCAGCCGCACCTGCCAACTGCGCACTTCCCGTTCGCAACAAAACATCATTTGCCACTCCACTCCACCGCACCATACCAGACCCGACCCGACCCGATTGTTCGTATCCGGCGACGCCAGCGTGATCCGAGAAAATCCGACCCAATGGCCCGGAAGAAGATCAGAGAATACGACTCCAAGAGGCTGCTCAAGCAGCACCTGAAACGACTCACCGGAATCGACCTCCAGATCAACTCAGCTCAGGTGACCGAGTCAACGGACTTCACCGAGTTGGCGAACGAGCTGCCATGGCTGTCGTCGACGCGGCTGGTGGTGAAGCCCGACATGCTTTTCGGAAAGCGCGGAAAGAGCGGCCTCGTCGCCCTGAACTTGGACATGGCGCAGGTCGCCGAGTTCGTCAAGCAGCGACTCGGTAAGGAGGTTAAGACTATATTTCTTCCGACCGAGAAGCCTATGACGAATGACGCTTGTGCTCCATTGATTGCCACTCTTCCATTGGAGGTCAGAGACAAAATTGGGGATTTCATAAAGGGCGTATTTTCTGTATTCCAGGATTTGGATTTTAGTTTCCTGGAAATGAACCCATTTACCTTGGTTGACGGTGAACCTTATCCATTAGATATGAGGGGGGAGCTGGATGACACTGCTGCCTTCAAGAACTTCAATACATGGGGCAATGTGGAGTTTCCACTGCCTTTCGGCAGAGTCTTAAGTCCTACAGAAACGTTTATTCATTCTCTGGATGAAAAGACAAGCGCATCCTTAAAATTCACTGTGTTGAACCCAAAAGGACGCATCTGGACCATGGTAGCTGGAGGGGGTGCAAGTGTTATTTATGCTGATACTGTTGGAGATTTGGGTTATGCTTCAGAACTTGGAAATTATGCAGAGTATAGTGGAGCTCCAAATGAGGAAGAGGTGTTGCAATATGCAAGAGTTGTGGTCGATTGTGCAACAGCTGATCTCAGATGGTCGTAA

Protein Analysis

356

Amino Acids

40.1

Weight (kDa)

8.67

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Citrate_synth_N PF24948 80 - 172 2.5e-26 ATP-citrate synthase ATP-grasp domain
ATP-grasp_2 PF08442 84 - 174 1.8e-06 ATP-grasp domain
Citrate_synth_N PF24948 173 - 254 5e-17 ATP-citrate synthase ATP-grasp domain
Citrate_bind PF16114 265 - 350 1.3e-40 ATP citrate lyase citrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 111
Acc16I TGCGCA 1 cut(s) 114
Acc36I ACCTGC 2 cut(s) 111, 463
AccB7I CCANNNNNTGG 1 cut(s) 646
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 389
AccII CGCG 3 cut(s) 55, 394, 432
AciI CCGC 5 cut(s) 98, 159, 394, 432, 441
AclI AACGTT 1 cut(s) 815
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 942
AcvI CACGTG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 460, 646
AflII CTTAAG 1 cut(s) 799
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 3 cut(s) 745, 754, 871
AjnI CCWGG 2 cut(s) 639, 660
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 6 cut(s) 329, 373, 724, 902, 992, 1049
AluI AGCT 6 cut(s) 329, 373, 724, 902, 992, 1049
Alw21I GWGCWC 2 cut(s) 565, 994
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 2 cut(s) 237, 442
ApeKI GCWGC 5 cut(s) 274, 283, 373, 493, 737
ApoI RAATTY 1 cut(s) 857
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AspLEI GCGC 4 cut(s) 115, 432, 472, 848
AspS9I GGNCC 2 cut(s) 238, 891
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 5 cut(s) 292, 346, 346, 415, 704
AvaII GGWCC 1 cut(s) 891
BanII GRGCYC 1 cut(s) 994
BbrPI CACGTG 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 565, 994
BbvI GCAGC 5 cut(s) 261, 295, 360, 505, 724
BccI CCATC 1 cut(s) 1053
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 2 cut(s) 641, 662
BciVI GTATCC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 807
BfrI CTTAAG 1 cut(s) 799
BfuAI ACCTGC 2 cut(s) 111, 463
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 8 cut(s) 98, 275, 284, 374, 395, 442, 494, 738
BlsI GCNGC 8 cut(s) 99, 276, 285, 375, 396, 443, 495, 739
Bme1390I CCNGG 3 cut(s) 241, 641, 662
Bme18I GGWCC 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 238, 891
BmrFI CCNGG 3 cut(s) 241, 641, 662
BmsI GCATC 2 cut(s) 857, 894
BpmI CTGGAG 2 cut(s) 299, 924
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 377, 681, 894
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 646
Bse3DI GCAATG 1 cut(s) 772
BseBI CCWGG 2 cut(s) 641, 662
BseDI CCNNGG 3 cut(s) 377, 681, 894
BseGI GGATG 3 cut(s) 733, 838, 848
BseLI CCNNNNNNNGG 2 cut(s) 460, 646
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 2 cut(s) 339, 344
BseXI GCAGC 5 cut(s) 261, 295, 360, 505, 724
Bsh1236I CGCG 3 cut(s) 55, 394, 432
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 2 cut(s) 239, 444
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 2 cut(s) 565, 994
BsiSI CCGG 3 cut(s) 199, 241, 303
BslI CCNNNNNNNGG 2 cut(s) 460, 646
BsmAI GTCTC 1 cut(s) 591
BsnI GGCC 2 cut(s) 239, 444
Bsp1286I GDGCHC 2 cut(s) 565, 994
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 4 cut(s) 214, 249, 318, 1051
Bsp19I CCATGG 2 cut(s) 377, 894
BspACI CCGC 5 cut(s) 98, 159, 394, 432, 441
BspANI GGCC 2 cut(s) 239, 444
BspCNI CTCAG 3 cut(s) 338, 343, 1068
BspFNI CGCG 3 cut(s) 55, 394, 432
BspMI ACCTGC 2 cut(s) 111, 463
BspPI GGATC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 772
BsrGI TGTACA 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 377, 681, 894
BssMI GATC 4 cut(s) 214, 249, 318, 1051
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 3 cut(s) 377, 681, 894
Bst2UI CCWGG 2 cut(s) 641, 662
Bst4CI ACNGT 4 cut(s) 82, 692, 865, 937
Bst6I CTCTTC 2 cut(s) 585, 999
BstACI GRCGYC 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 799
BstAUI TGTACA 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 325, 330, 1055
BstDSI CCRYGG 2 cut(s) 377, 894
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 3 cut(s) 733, 838, 848
BstFNI CGCG 3 cut(s) 55, 394, 432
BstHHI GCGC 4 cut(s) 115, 432, 472, 848
BstKTI GATC 4 cut(s) 217, 252, 321, 1054
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 4 cut(s) 214, 249, 318, 1051
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 9 cut(s) 103, 112, 208, 280, 283, 379, 415, 438, 476
BstNI CCWGG 2 cut(s) 641, 662
BstNSI RCATGY 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 3 cut(s) 239, 639, 660
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 3 cut(s) 55, 394, 432
BstV1I GCAGC 5 cut(s) 261, 295, 360, 505, 724
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 239, 444
BtgI CCRYGG 2 cut(s) 377, 894
BtsCI GGATG 3 cut(s) 733, 838, 848
BtsI GCAGTG 2 cut(s) 732, 779
BtsIMutI CAGTG 3 cut(s) 732, 779, 861
BveI ACCTGC 2 cut(s) 111, 463
Cac8I GCNNGC 1 cut(s) 209
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 4 cut(s) 115, 432, 472, 848
Cfr13I GGNCC 2 cut(s) 238, 891
CseI GACGC 4 cut(s) 213, 400, 563, 891
Csp6I GTAC 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 1011, 1046
CviAII CATG 5 cut(s) 378, 415, 466, 759, 895
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 3 cut(s) 325, 330, 1055
DpnI GATC 4 cut(s) 216, 251, 320, 1053
DpnII GATC 4 cut(s) 214, 249, 318, 1051
Eam1104I CTCTTC 2 cut(s) 585, 999
EarI CTCTTC 2 cut(s) 585, 999
Ecl136II GAGCTC 1 cut(s) 992
Eco130I CCWWGG 3 cut(s) 377, 681, 894
Eco24I GRGCYC 1 cut(s) 994
Eco47I GGWCC 1 cut(s) 891
Eco53kI GAGCTC 1 cut(s) 992
Eco57I CTGAAG 1 cut(s) 942
Eco72I CACGTG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 992
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 639, 660
EcoT14I CCWWGG 3 cut(s) 377, 681, 894
EcoT38I GRGCYC 1 cut(s) 994
ErhI CCWWGG 3 cut(s) 377, 681, 894
FaeI CATG 5 cut(s) 381, 418, 469, 762, 898
FatI CATG 5 cut(s) 377, 414, 465, 758, 894
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 8 cut(s) 98, 275, 284, 374, 395, 442, 494, 738
FokI GGATG 3 cut(s) 740, 835, 845
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 8 cut(s) 98, 275, 284, 374, 395, 442, 494, 738
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 4 cut(s) 114, 431, 471, 847
GluI GCNGC 8 cut(s) 98, 275, 284, 374, 395, 442, 494, 738
GsuI CTGGAG 2 cut(s) 299, 924
HaeIII GGCC 2 cut(s) 239, 444
HapII CCGG 3 cut(s) 199, 241, 303
HgaI GACGC 4 cut(s) 213, 400, 563, 891
HhaI GCGC 4 cut(s) 115, 432, 472, 848
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 5 cut(s) 381, 418, 469, 762, 898
Hin6I GCGC 4 cut(s) 113, 430, 470, 846
HinP1I GCGC 4 cut(s) 113, 430, 470, 846
HincII GTYRAC 3 cut(s) 345, 390, 688
HindII GTYRAC 3 cut(s) 345, 390, 688
HinfI GANTC 6 cut(s) 263, 297, 306, 341, 498, 795
HpaII CCGG 3 cut(s) 199, 241, 303
HphI GGTGA 5 cut(s) 292, 346, 346, 415, 704
Hpy166II GTNNAC 5 cut(s) 85, 345, 390, 688, 695
Hpy188I TCNGA 8 cut(s) 219, 229, 254, 425, 531, 596, 961, 1058
Hpy188III TCNNGA 4 cut(s) 316, 745, 830, 889
Hpy8I GTNNAC 5 cut(s) 85, 345, 390, 688, 695
Hpy99I CGWCG 4 cut(s) 207, 391, 394, 452
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 4 cut(s) 82, 692, 865, 937
HpyCH4IV ACGT 2 cut(s) 34, 815
HpyCH4V TGCA 5 cut(s) 914, 977, 1015, 1022, 1043
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 112, 208, 280, 283, 379, 415, 438, 476
HpyF3I CTNAG 3 cut(s) 325, 330, 1055
HpySE526I ACGT 2 cut(s) 34, 815
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 5 cut(s) 381, 418, 469, 762, 898
HspAI GCGC 4 cut(s) 113, 430, 470, 846
Kzo9I GATC 4 cut(s) 214, 249, 318, 1051
LmnI GCTCC 4 cut(s) 568, 721, 989, 997
Lsp1109I GCAGC 5 cut(s) 261, 295, 360, 505, 724
LweI GCATC 2 cut(s) 857, 894
MaeII ACGT 2 cut(s) 34, 815
MaeIII GTNAC 2 cut(s) 58, 334
MalI GATC 4 cut(s) 216, 251, 320, 1053
MbiI CCGCTC 1 cut(s) 441
MboI GATC 4 cut(s) 214, 249, 318, 1051
MboII GAAGA 5 cut(s) 256, 259, 518, 572, 1016
MhlI GDGCHC 2 cut(s) 565, 994
MluCI AATT 3 cut(s) 603, 857, 970
MluI ACGCGT 1 cut(s) 53
MlyI GAGTC 5 cut(s) 257, 291, 350, 492, 804
MmeI TCCRAC 4 cut(s) 101, 252, 554, 919
MnlI CCTC 9 cut(s) 264, 323, 455, 502, 583, 708, 899, 994, 1000
MseI TTAA 3 cut(s) 513, 800, 854
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 799
MspI CCGG 3 cut(s) 199, 241, 303
MspR9I CCNGG 3 cut(s) 241, 641, 662
MvaI CCWGG 2 cut(s) 641, 662
MvnI CGCG 3 cut(s) 55, 394, 432
MwoI GCNNNNNNNGC 9 cut(s) 103, 112, 208, 280, 283, 379, 415, 438, 476
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 2 cut(s) 377, 894
NdeII GATC 4 cut(s) 214, 249, 318, 1051
NlaIII CATG 5 cut(s) 381, 418, 469, 762, 898
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 58, 334
NsbI TGCGCA 1 cut(s) 114
NspI RCATGY 1 cut(s) 418
OliI CACNNNNGTG 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 199, 483
PfeI GAWTC 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 646
PfoI TCCNGGA 2 cut(s) 639, 660
PkrI GCNGC 8 cut(s) 99, 276, 285, 375, 396, 443, 495, 739
PleI GAGTC 5 cut(s) 257, 291, 349, 492, 803
PmaCI CACGTG 1 cut(s) 35
PmlI CACGTG 1 cut(s) 35
PpsI GAGTC 5 cut(s) 257, 291, 349, 492, 803
Ppu21I YACGTR 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 994
Psp1406I AACGTT 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 639, 660
PspCI CACGTG 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 639, 660
PspPI GGNCC 2 cut(s) 238, 891
PstNI CAGNNNCTG 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 994
SalI GTCGAC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 513, 800, 854
SatI GCNGC 8 cut(s) 98, 275, 284, 374, 395, 442, 494, 738
Sau3AI GATC 4 cut(s) 214, 249, 318, 1051
Sau96I GGNCC 2 cut(s) 238, 891
SchI GAGTC 5 cut(s) 257, 291, 350, 492, 804
ScrFI CCNGG 3 cut(s) 241, 641, 662
SduI GDGCHC 2 cut(s) 565, 994
SfaNI GCATC 2 cut(s) 857, 894
SfcI CTRYAG 1 cut(s) 807
SgrDI CGTCGACG 1 cut(s) 388
SinI GGWCC 1 cut(s) 891
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 278, 799
SmoI CTYRAG 2 cut(s) 278, 799
Sse9I AATT 3 cut(s) 603, 857, 970
SsiI CCGC 5 cut(s) 98, 159, 394, 432, 441
SstI GAGCTC 1 cut(s) 994
StyD4I CCNGG 3 cut(s) 239, 639, 660
StyI CCWWGG 3 cut(s) 377, 681, 894
TaaI ACNGT 4 cut(s) 82, 692, 865, 937
TaiI ACGT 2 cut(s) 37, 818
TaqI TCGA 3 cut(s) 309, 389, 1035
TaqII GACCGA 2 cut(s) 353, 548
TasI AATT 3 cut(s) 603, 857, 970
TatI WGTACW 1 cut(s) 82
TauI GCSGC 3 cut(s) 100, 397, 444
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 513, 800, 854
Tru9I TTAA 3 cut(s) 513, 800, 854
TscAI CASTG 3 cut(s) 739, 786, 868
TseFI GTSAC 2 cut(s) 58, 334
TseI GCWGC 5 cut(s) 274, 283, 373, 493, 737
Tsp45I GTSAC 2 cut(s) 58, 334
TspDTI ATGAA 4 cut(s) 604, 683, 812, 849
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 3 cut(s) 739, 786, 868
Tth111I GACNNNGTC 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 646
Vha464I CTTAAG 1 cut(s) 799
VpaK11BI GGWCC 1 cut(s) 891
XapI RAATTY 1 cut(s) 857
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.