Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8985584 .. 8985982

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACCGACGAAATCCTAACAAGAAGGAAGCACTACGAAGAAGCGAGACCTGAAGGAGATTGCGGGCAGCTTCTGGTCAGCATCTTTGATTTTCAACAAAAAAAATGGAGGCAAAAGCAGAAGCTGGAGAAGCCAATCGAGAGACAATTCAGAGAAACCCAGTCGGACATCGCCGATTACGGCTTCGACCGGCGCTCATGCGACACGATCGATCCAAGGTTTTCGCTTGACGCGGGTCGGATGTCGCTCAACGCAGGTCGGATGTCATTCGACGACCCGAGATACTCCTTTGACGAGCCTCGGACCTCGTGGAACAGGTACCTCATTGGAATGTCGTGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

115

Amino Acids

13.65

Weight (kDa)

6.59

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	37 - 111	1.2e-25	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	63, 233
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	2 cut(s)	70, 124
AluI	AGCT	2 cut(s)	70, 124
Alw26I	GTCTC	2 cut(s)	40, 136
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	2 cut(s)	73, 124
Ama87I	CYCGRG	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	67
Asp718I	GGTACC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	303
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	40, 136
BfoI	RGCGCY	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	320
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	215, 299
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	215, 299
BseGI	GGATG	2 cut(s)	246, 267
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	2 cut(s)	190, 210
BshNI	GGYRCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	2 cut(s)	190, 210
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	40, 136
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	207, 211
BspACI	CCGC	2 cut(s)	63, 233
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	320
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	215, 299
BssMI	GATC	2 cut(s)	207, 211
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	246, 267
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	210, 214
BstMAI	GTCTC	2 cut(s)	40, 136
BstMBI	GATC	2 cut(s)	207, 211
BstMCI	CGRYCG	2 cut(s)	190, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	246, 267
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	65
CaiI	CAGNNNCTG	2 cut(s)	73, 124
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	5 cut(s)	70, 124, 133, 183, 298
CviKI_1	RGCY	5 cut(s)	70, 124, 133, 183, 298
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	2 cut(s)	209, 213
DpnII	GATC	2 cut(s)	207, 211
Eco130I	CCWWGG	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FatI	CATG	1 cut(s)	197
FauI	CCCGC	2 cut(s)	56, 226
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	253, 274
Fsp4HI	GCNGC	1 cut(s)	68
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	196
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	152, 166, 240, 261, 303
Hpy188III	TCNNGA	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	11, 275
HpyAV	CCTTC	2 cut(s)	18, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	207, 211
LpnPI	CCDG	7 cut(s)	59, 63, 110, 173, 203, 240, 301
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	90
MalI	GATC	2 cut(s)	209, 213
MboI	GATC	2 cut(s)	207, 211
MboII	GAAGA	1 cut(s)	50
MluCI	AATT	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	144, 218, 239
MnlI	CCTC	4 cut(s)	102, 309, 316, 332
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	2 cut(s)	207, 211
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	303
PstNI	CAGNNNCTG	2 cut(s)	73, 124
PvuI	CGATCG	1 cut(s)	210
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	207, 211
Sau96I	GGNCC	1 cut(s)	303
SetI	ASST	8 cut(s)	52, 72, 126, 221, 259, 308, 320, 324
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	63, 233
StyI	CCWWGG	1 cut(s)	215
TaqI	TCGA	4 cut(s)	138, 186, 210, 270
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	146
TseI	GCWGC	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.