pycom16g13530

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
9711070 .. 9712288
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGTACTTTATCTTTAGCCAATTAATCGAACCACAATCTCATACCTTATGTTTTAAAAATTACAATATCATACCTCTCTTACAAATTTGTTGCAATGTTATACCTCCGTCAAATTTTCTGCTAATTTTTCAATTAAATGTTTTCTGTCCACTCCTTTTATTTGAAAGACGTGGGATCCACCCCCACAAACCCATCATTCTTCCCCATACACCGACGACATCCCATCTCCGGGCACCCAACCTCACCACCTGCCTCCTCCGCCAGTCCTTCGACTCCCCCCCATCTCTGGGCACCCAACCTCACCACCCTGCTTCCCTAGTACGCCCGCCGTCCTCCTCTCCTCAAACCCCCAGAACAGCAACAACCACCACGTCGTCATACTCCTCATCGGCTTCCTTCAAGGGCGGCTGCTGCCGTCTCTTCTTACTCTTCTCCTTCCTAGCACTCCTCGTCCTCGCCGTCGTTCGCGTGCTCTTCTCAGCCGCTAACCCCAACAAGGTCGGGATCAAGTACGTCGAGTCCAGGTTCACTATCATGTACCTGAGATTTCATGGGCAAGGCCTCCATCCCCGGCCTCTACCAGGATGCGGACACTGTCGGCCAAGTCGTCGCCACCATCGCCGTCAATCGGGTCAATTTGCTGACGCTGCAGATTTAGTCTGCGACGCATCCCTCAATATGCTTCCTGAATCAAAACCCACTTCCCAATTTTTCTTTTTCTGTTCGGCTACTAAGAAAATCACAGAAACCCACTATCTTCGGTGGGGGAGAGTGGAGGTGGAGAGAAGGGGAGGAGAGCAACGGAGGGAGGGGGAGTCGAAGGTGTGGCGGAGGAGGTTGAGGTGGAGGCAGGTGGTGAGGTTGGTACCCGGAGATGGGACGTCGTCGATTTACCGGGGAAGAAGGATGGTATTTAATTTTTTTATTTTTAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

313

Amino Acids

35.68

Weight (kDa)

10.52

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 257, 841
AatII GACGTC 1 cut(s) 884
Acc36I ACCTGC 2 cut(s) 257, 841
Acc65I GGTACC 1 cut(s) 865
AccB1I GGYRCC 3 cut(s) 232, 290, 865
AccII CGCG 1 cut(s) 468
AciI CCGC 6 cut(s) 259, 326, 405, 483, 588, 829
AclWI GGATC 3 cut(s) 169, 182, 512
AcoI YGGCCR 1 cut(s) 599
AcsI RAATTY 2 cut(s) 84, 112
AcyI GRCGYC 1 cut(s) 881
AfaI GTAC 5 cut(s) 5, 321, 512, 539, 867
AgsI TTSAA 3 cut(s) 131, 164, 400
AjiI CACGTC 2 cut(s) 170, 372
AjnI CCWGG 2 cut(s) 521, 580
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 169, 182, 512
AoxI GGCC 3 cut(s) 559, 572, 599
ApeKI GCWGC 3 cut(s) 408, 411, 647
ApoI RAATTY 2 cut(s) 84, 112
AseI ATTAAT 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 865
AsuC2I CCSGG 4 cut(s) 230, 571, 870, 896
AsuHPI GGTGA 3 cut(s) 235, 293, 868
BaeGI GKGCMC 2 cut(s) 235, 293
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 3 cut(s) 232, 290, 865
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 395, 398, 634
BccI CCATC 7 cut(s) 200, 231, 289, 573, 624, 869, 901
BceAI ACGGC 4 cut(s) 313, 399, 443, 606
BciT130I CCWGG 2 cut(s) 523, 582
BcnI CCSGG 4 cut(s) 230, 571, 870, 896
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 317, 440
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 2 cut(s) 257, 841
BisI GCNGC 5 cut(s) 406, 409, 412, 483, 648
BlsI GCNGC 5 cut(s) 407, 410, 413, 484, 649
Bme1390I CCNGG 6 cut(s) 230, 523, 571, 582, 870, 896
BmgBI CACGTC 2 cut(s) 170, 372
BmiI GGNNCC 4 cut(s) 176, 234, 292, 867
BmrFI CCNGG 6 cut(s) 230, 523, 571, 582, 870, 896
BmsI GCATC 2 cut(s) 575, 677
BpuMI CCSGG 4 cut(s) 230, 571, 870, 896
BsaHI GRCGYC 1 cut(s) 881
BsaJI CCNNGG 2 cut(s) 569, 895
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 523, 582
BseDI CCNNGG 2 cut(s) 569, 895
BseGI GGATG 5 cut(s) 218, 565, 590, 668, 912
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 492, 533
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 7 cut(s) 245, 325, 330, 373, 437, 807, 847
BseSI GKGCMC 2 cut(s) 235, 293
BseXI GCAGC 3 cut(s) 395, 398, 634
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 3 cut(s) 561, 574, 601
BshNI GGYRCC 3 cut(s) 232, 290, 865
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 4 cut(s) 229, 571, 870, 895
BslFI GGGAC 1 cut(s) 892
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 892
BsnI GGCC 3 cut(s) 561, 574, 601
Bsp1286I GDGCHC 3 cut(s) 235, 293, 474
Bsp143I GATC 2 cut(s) 174, 504
BspACI CCGC 6 cut(s) 259, 326, 405, 483, 588, 829
BspANI GGCC 3 cut(s) 561, 574, 601
BspCNI CTCAG 2 cut(s) 491, 534
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 4 cut(s) 176, 234, 292, 867
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 2 cut(s) 257, 841
BspPI GGATC 3 cut(s) 169, 182, 512
BspQI GCTCTTC 1 cut(s) 479
BspT107I GGYRCC 3 cut(s) 232, 290, 865
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 569, 895
BssMI GATC 2 cut(s) 174, 504
BssNI GRCGYC 1 cut(s) 881
Bst2UI CCWGG 2 cut(s) 523, 582
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 3 cut(s) 425, 434, 479
BstACI GRCGYC 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 326, 470
BstDEI CTNAG 3 cut(s) 478, 542, 732
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 5 cut(s) 218, 565, 590, 668, 912
BstFNI CGCG 1 cut(s) 468
BstKTI GATC 2 cut(s) 177, 507
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 174, 504
BstMWI GCNNNNNNNGC 4 cut(s) 258, 411, 618, 647
BstNI CCWGG 2 cut(s) 523, 582
BstSCI CCNGG 6 cut(s) 228, 521, 569, 580, 868, 894
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 2 cut(s) 235, 293
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 395, 398, 634
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 3 cut(s) 561, 574, 601
BtgZI GCGATG 1 cut(s) 602
BtrI CACGTC 2 cut(s) 170, 372
BtsCI GGATG 5 cut(s) 218, 565, 590, 668, 912
BtsIMutI CAGTG 1 cut(s) 592
BveI ACCTGC 2 cut(s) 257, 841
Cac8I GCNNGC 2 cut(s) 326, 470
CseI GACGC 2 cut(s) 653, 674
Csp6I GTAC 5 cut(s) 4, 320, 511, 538, 866
CviAII CATG 2 cut(s) 535, 551
CviJI RGCY 8 cut(s) 18, 392, 408, 482, 561, 574, 601, 728
CviKI_1 RGCY 8 cut(s) 18, 392, 408, 482, 561, 574, 601, 728
CviQI GTAC 5 cut(s) 4, 320, 511, 538, 866
DdeI CTNAG 3 cut(s) 478, 542, 732
DpnI GATC 2 cut(s) 176, 506
DpnII GATC 2 cut(s) 174, 504
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 599
Eam1104I CTCTTC 3 cut(s) 425, 434, 479
EarI CTCTTC 3 cut(s) 425, 434, 479
EciI GGCGGA 2 cut(s) 248, 844
Eco147I AGGCCT 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRII CCWGG 2 cut(s) 521, 580
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 2 cut(s) 538, 554
FaiI YATR 9 cut(s) 42, 49, 71, 101, 207, 379, 536, 552, 680
FaqI GGGAC 1 cut(s) 892
FatI CATG 2 cut(s) 534, 550
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 5 cut(s) 406, 409, 412, 483, 648
FokI GGATG 5 cut(s) 205, 552, 597, 655, 919
Fsp4HI GCNGC 5 cut(s) 406, 409, 412, 483, 648
FspBI CTAG 2 cut(s) 317, 440
GluI GCNGC 5 cut(s) 406, 409, 412, 483, 648
HaeIII GGCC 3 cut(s) 561, 574, 601
HapII CCGG 4 cut(s) 229, 571, 870, 895
HgaI GACGC 2 cut(s) 653, 674
Hin1I GRCGYC 1 cut(s) 881
Hin1II CATG 2 cut(s) 538, 554
HinfI GANTC 4 cut(s) 272, 518, 689, 815
HpaII CCGG 4 cut(s) 229, 571, 870, 895
HphI GGTGA 3 cut(s) 235, 293, 868
Hpy166II GTNNAC 2 cut(s) 149, 528
Hpy188III TCNNGA 2 cut(s) 502, 686
Hpy8I GTNNAC 2 cut(s) 149, 528
Hpy99I CGWCG 8 cut(s) 217, 376, 464, 518, 612, 668, 886, 889
HpyAV CCTTC 6 cut(s) 277, 406, 445, 780, 814, 897
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 4 cut(s) 169, 371, 513, 881
HpyCH4V TGCA 2 cut(s) 93, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 258, 411, 618, 647
HpyF3I CTNAG 3 cut(s) 478, 542, 732
HpySE526I ACGT 4 cut(s) 169, 371, 513, 881
Hsp92I GRCGYC 1 cut(s) 881
Hsp92II CATG 2 cut(s) 538, 554
KpnI GGTACC 1 cut(s) 869
Kzo9I GATC 2 cut(s) 174, 504
LguI GCTCTTC 1 cut(s) 479
Lsp1109I GCAGC 3 cut(s) 395, 398, 634
LweI GCATC 2 cut(s) 575, 677
MaeI CTAG 2 cut(s) 317, 440
MaeII ACGT 4 cut(s) 169, 371, 513, 881
MalI GATC 2 cut(s) 176, 506
MboI GATC 2 cut(s) 174, 504
MboII GAAGA 6 cut(s) 191, 412, 421, 466, 749, 912
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 3 cut(s) 235, 293, 474
MluCI AATT 9 cut(s) 20, 58, 84, 112, 123, 131, 635, 707, 916
MlyI GAGTC 3 cut(s) 266, 527, 824
MseI TTAA 6 cut(s) 23, 54, 134, 915, 930, 937
MslI CAYNNNNRTG 1 cut(s) 533
MspI CCGG 4 cut(s) 229, 571, 870, 895
MspR9I CCNGG 6 cut(s) 230, 523, 571, 582, 870, 896
MvaI CCWGG 2 cut(s) 523, 582
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 4 cut(s) 258, 411, 618, 647
NciI CCSGG 4 cut(s) 230, 571, 870, 896
NdeII GATC 2 cut(s) 174, 504
NlaIII CATG 2 cut(s) 538, 554
NlaIV GGNNCC 4 cut(s) 176, 234, 292, 867
PaqCI CACCTGC 2 cut(s) 257, 841
PceI AGGCCT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 604
PfeI GAWTC 1 cut(s) 689
PflFI GACNNNGTC 2 cut(s) 594, 883
PkrI GCNGC 5 cut(s) 407, 410, 413, 484, 649
PleI GAGTC 3 cut(s) 266, 526, 823
PpsI GAGTC 3 cut(s) 266, 526, 823
PshBI ATTAAT 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 521, 580
PspGI CCWGG 2 cut(s) 521, 580
PspN4I GGNNCC 4 cut(s) 176, 234, 292, 867
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 2 cut(s) 594, 883
RsaI GTAC 5 cut(s) 5, 321, 512, 539, 867
RsaNI GTAC 5 cut(s) 4, 320, 511, 538, 866
RseI CAYNNNNRTG 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 6 cut(s) 23, 54, 134, 915, 930, 937
SatI GCNGC 5 cut(s) 406, 409, 412, 483, 648
Sau3AI GATC 2 cut(s) 174, 504
SchI GAGTC 3 cut(s) 266, 527, 824
ScrFI CCNGG 6 cut(s) 230, 523, 571, 582, 870, 896
SduI GDGCHC 3 cut(s) 235, 293, 474
SfaNI GCATC 2 cut(s) 575, 677
SfcI CTRYAG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 9 cut(s) 20, 58, 84, 112, 123, 131, 635, 707, 916
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 6 cut(s) 259, 326, 405, 483, 588, 829
SspI AATATT 1 cut(s) 934
SspMI CTAG 2 cut(s) 317, 440
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 6 cut(s) 228, 521, 569, 580, 868, 894
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 4 cut(s) 172, 374, 516, 884
TaqI TCGA 5 cut(s) 27, 270, 516, 818, 887
TasI AATT 9 cut(s) 20, 58, 84, 112, 123, 131, 635, 707, 916
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 408, 485
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 6 cut(s) 23, 54, 134, 915, 930, 937
Tru9I TTAA 6 cut(s) 23, 54, 134, 915, 930, 937
TscAI CASTG 1 cut(s) 599
TseI GCWGC 3 cut(s) 408, 411, 647
TspDTI ATGAA 1 cut(s) 539
TspGWI ACGGA 2 cut(s) 96, 817
TspRI CASTG 1 cut(s) 599
Tth111I GACNNNGTC 2 cut(s) 594, 883
VspI ATTAAT 1 cut(s) 23
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 2 cut(s) 84, 112
XspI CTAG 2 cut(s) 317, 440
ZraI GACGTC 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.