pycom16g15960
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0024705
Physical Location & Seq
Reverse (-)
11886504 .. 11891307
4804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGGCCGGCGGAGGGTTCTCAGCGGGTCCGGACGGGCGTGAGTTCGAGGCCAAGATCACGCCCATCGTCATCATCTCGTGTATAATGGCTGCTACTGGTGGACTCATGTTTGGTTACGATGTCGGTGTTTCAGGTGGAGTTACATCGATGTCCCCATTCTTGAAAAAGTTTTTCCCGGTTGTGTACAGGAGGACTCTAGAACAGGGGATCAACAGCAACTACTGCAAATACGACAACCAGGGCCTGCAGTTATTCACGTCGTCGCTGTACCTGGCAGGCTTAACTGCCACATTCGCCGCTTCCTACACCACCAGGAAGTTCGGGCGGAGGCCGTCTATGCTGATTGCTGGGATTTTCTTCATTGGCGGCACAATTCTCAATGCTGCAGCACAAGACCTCGCTATGCTCATCATTGGAAGGATCTCACTTGGTTGTGGAGTTGGGTTCGCAAATCAGGCTGTACCATTGTTTCTTTCGGAGATTGCACCGACAAGAATCCGCGGAGGGCTGAACATATTGTTCCAGCTTAATGTCACAATAGGCATTCTATTTGCAAACCTCGTTAATTATGGCACCAGCAAGATCACAGGAGGATGGGGTTGGAGGGTGTCATTGGGGCTGGCTGGTTTACCTGCCGGTCTCCTAACCTTGGGAGCTCTCTTGGTGGTCGAAACTCCTAACAGTCTCGTAGAACGTGGTCTCTTAGACCAAGGAAAATCCGTACTTAAAAGGATCCGCGGCACTGAAAATGTCGAACCAGAGTTCTTGGATCTTGTCGAGGCAAGTCGCATAGCAAAAGAAGTGAAGCACCCCTTTAGAAATCTCATAAAGCGCAGGAATCGTCCCCAACTAATCATTGCAGTAGCCTTGCAGGTTAGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

295

Amino Acids

31.5

Weight (kDa)

9.92

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 27 - 292 9.7e-61 Sugar (and other) transporter
MFS_1 PF07690 80 - 249 2.7e-13 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024705)

Species Orthologous Gene IDs
pyrus_communis pycom16g15960
rosa_laevigata RLG00000008350
rosa_roxburghii Rroxscaffold_5G00356080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 640, 862
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 2 cut(s) 501, 738
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 9 cut(s) 9, 23, 297, 325, 366, 499, 501, 736, 738
AclWI GGATC 5 cut(s) 215, 428, 727, 740, 777
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 185, 269, 462, 723
AfiI CCNNNNNNNGG 2 cut(s) 12, 649
AgsI TTSAA 1 cut(s) 163
AjiI CACGTC 1 cut(s) 258
AjnI CCWGG 3 cut(s) 237, 270, 311
AluBI AGCT 2 cut(s) 526, 656
AluI AGCT 2 cut(s) 526, 656
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 3 cut(s) 644, 689, 704
AlwI GGATC 5 cut(s) 215, 428, 727, 740, 777
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 4 cut(s) 3, 48, 241, 329
ApeKI GCWGC 3 cut(s) 89, 383, 386
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 2 cut(s) 26, 241
AsuC2I CCSGG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 26
BamHI GGATCC 1 cut(s) 732
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 658
BauI CACGAG 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 3 cut(s) 76, 370, 398
BccI CCATC 2 cut(s) 71, 588
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 3 cut(s) 239, 272, 313
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 3 cut(s) 644, 689, 704
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 245, 384
BfuAI ACCTGC 2 cut(s) 640, 862
BisI GCNGC 6 cut(s) 90, 297, 367, 384, 387, 739
BlsI GCNGC 6 cut(s) 91, 298, 368, 385, 388, 740
Bme1390I CCNGG 4 cut(s) 176, 239, 272, 313
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 26, 241
BmiI GGNNCC 3 cut(s) 27, 574, 734
BmrFI CCNGG 4 cut(s) 176, 239, 272, 313
BpuMI CCSGG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 146
BsaI GGTCTC 2 cut(s) 644, 704
BsaJI CCNNGG 5 cut(s) 238, 499, 648, 709, 736
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 649
Bse118I RCCGGY 2 cut(s) 5, 635
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 28
BseBI CCWGG 3 cut(s) 239, 272, 313
BseCI ATCGAT 1 cut(s) 146
BseDI CCNNGG 5 cut(s) 238, 499, 648, 709, 736
BseGI GGATG 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 12, 649
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 76, 370, 398
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 501, 738
BshFI GGCC 4 cut(s) 5, 50, 243, 331
BshNI GGYRCC 1 cut(s) 572
BshVI ATCGAT 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 4 cut(s) 6, 29, 176, 636
BslFI GGGAC 2 cut(s) 136, 828
BslI CCNNNNNNNGG 2 cut(s) 12, 649
BsmAI GTCTC 3 cut(s) 644, 689, 704
BsmFI GGGAC 2 cut(s) 136, 828
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 4 cut(s) 5, 50, 243, 331
Bso31I GGTCTC 2 cut(s) 644, 704
Bsp1286I GDGCHC 1 cut(s) 658
Bsp13I TCCGGA 1 cut(s) 28
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 6 cut(s) 54, 207, 420, 582, 732, 769
BspACI CCGC 9 cut(s) 9, 23, 297, 325, 366, 499, 501, 736, 738
BspANI GGCC 4 cut(s) 5, 50, 243, 331
BspCNI CTCAG 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 2 cut(s) 501, 738
BspLI GGNNCC 3 cut(s) 27, 574, 734
BspMAI CTGCAG 2 cut(s) 249, 388
BspMI ACCTGC 2 cut(s) 640, 862
BspPI GGATC 5 cut(s) 215, 428, 727, 740, 777
BspT107I GGYRCC 1 cut(s) 572
BspTNI GGTCTC 2 cut(s) 644, 704
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 2 cut(s) 5, 635
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 2 cut(s) 5, 635
BssECI CCNNGG 5 cut(s) 238, 499, 648, 709, 736
BssMI GATC 6 cut(s) 54, 207, 420, 582, 732, 769
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 2 cut(s) 648, 709
Bst2BI CACGAG 1 cut(s) 76
Bst2UI CCWGG 3 cut(s) 239, 272, 313
Bst4CI ACNGT 1 cut(s) 683
BstAPI GCANNNNNTGC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 4 cut(s) 7, 245, 277, 621
BstDEI CTNAG 2 cut(s) 19, 703
BstDSI CCRYGG 2 cut(s) 499, 736
BstF5I GGATG 1 cut(s) 599
BstFNI CGCG 2 cut(s) 501, 738
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 6 cut(s) 57, 210, 423, 585, 735, 772
BstMAI GTCTC 3 cut(s) 644, 689, 704
BstMBI GATC 6 cut(s) 54, 207, 420, 582, 732, 769
BstMWI GCNNNNNNNGC 4 cut(s) 222, 293, 337, 455
BstNI CCWGG 3 cut(s) 239, 272, 313
BstSCI CCNGG 4 cut(s) 174, 237, 270, 311
BstSFI CTRYAG 2 cut(s) 245, 384
BstUI CGCG 2 cut(s) 501, 738
BstV1I GCAGC 3 cut(s) 76, 370, 398
BstX2I RGATCY 3 cut(s) 420, 732, 769
BstYI RGATCY 3 cut(s) 420, 732, 769
Bsu15I ATCGAT 1 cut(s) 146
BsuRI GGCC 4 cut(s) 5, 50, 243, 331
BsuTUI ATCGAT 1 cut(s) 146
BtgI CCRYGG 2 cut(s) 499, 736
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 741
BveI ACCTGC 2 cut(s) 640, 862
Cac8I GCNNGC 4 cut(s) 7, 245, 277, 621
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 834
Cfr10I RCCGGY 2 cut(s) 5, 635
Cfr13I GGNCC 2 cut(s) 26, 241
Cfr42I CCGCGG 2 cut(s) 502, 739
ClaI ATCGAT 1 cut(s) 146
Csp6I GTAC 4 cut(s) 184, 268, 461, 722
CviAII CATG 1 cut(s) 106
CviQI GTAC 4 cut(s) 184, 268, 461, 722
DdeI CTNAG 2 cut(s) 19, 703
DpnI GATC 6 cut(s) 56, 209, 422, 584, 734, 771
DpnII GATC 6 cut(s) 54, 207, 420, 582, 732, 769
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 24, 340
Ecl136II GAGCTC 1 cut(s) 656
Eco130I CCWWGG 2 cut(s) 648, 709
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 2 cut(s) 644, 704
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 237, 270, 311
EcoT14I CCWWGG 2 cut(s) 648, 709
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 648, 709
FaeI CATG 1 cut(s) 109
FaiI YATR 9 cut(s) 83, 107, 338, 404, 515, 570, 791, 827, 883
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FaqI GGGAC 2 cut(s) 136, 828
FatI CATG 1 cut(s) 105
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 6 cut(s) 90, 297, 367, 384, 387, 739
FokI GGATG 1 cut(s) 606
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 6 cut(s) 90, 297, 367, 384, 387, 739
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 833
GluI GCNGC 6 cut(s) 90, 297, 367, 384, 387, 739
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 4 cut(s) 5, 50, 243, 331
HapII CCGG 4 cut(s) 6, 29, 176, 636
HhaI GCGC 1 cut(s) 834
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HinfI GANTC 4 cut(s) 102, 193, 495, 838
HpaII CCGG 4 cut(s) 6, 29, 176, 636
Hpy166II GTNNAC 3 cut(s) 101, 184, 629
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 3 cut(s) 29, 160, 197
Hpy8I GTNNAC 3 cut(s) 101, 184, 629
Hpy99I CGWCG 2 cut(s) 262, 265
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 2 cut(s) 257, 694
HpyCH4V TGCA 7 cut(s) 225, 247, 386, 485, 554, 860, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 293, 337, 455
HpyF3I CTNAG 2 cut(s) 19, 703
HpySE526I ACGT 2 cut(s) 257, 694
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 832
Kpn2I TCCGGA 1 cut(s) 28
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspI CCGCGG 2 cut(s) 502, 739
Kzo9I GATC 6 cut(s) 54, 207, 420, 582, 732, 769
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 3 cut(s) 76, 370, 398
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 257, 694
MaeIII GTNAC 3 cut(s) 113, 139, 532
MalI GATC 6 cut(s) 56, 209, 422, 584, 734, 771
MboI GATC 6 cut(s) 54, 207, 420, 582, 732, 769
MboII GAAGA 1 cut(s) 349
MflI RGATCY 3 cut(s) 420, 732, 769
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 2 cut(s) 372, 565
MlyI GAGTC 2 cut(s) 96, 187
MmeI TCCRAC 1 cut(s) 581
MroI TCCGGA 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 4 cut(s) 281, 528, 564, 726
MspA1I CMGCKG 3 cut(s) 23, 501, 738
MspI CCGG 4 cut(s) 6, 29, 176, 636
MspR9I CCNGG 4 cut(s) 176, 239, 272, 313
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 3 cut(s) 239, 272, 313
MvnI CGCG 2 cut(s) 501, 738
MwoI GCNNNNNNNGC 4 cut(s) 222, 293, 337, 455
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 176
NdeII GATC 6 cut(s) 54, 207, 420, 582, 732, 769
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 3 cut(s) 27, 574, 734
NmuCI GTSAC 1 cut(s) 532
PctI GAATGC 1 cut(s) 543
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 495, 838
PkrI GCNGC 6 cut(s) 91, 298, 368, 385, 388, 740
PleI GAGTC 2 cut(s) 96, 187
PpsI GAGTC 2 cut(s) 96, 187
Psp124BI GAGCTC 1 cut(s) 658
Psp6I CCWGG 3 cut(s) 237, 270, 311
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 3 cut(s) 237, 270, 311
PspN4I GGNNCC 3 cut(s) 27, 574, 734
PspPI GGNCC 2 cut(s) 26, 241
PstI CTGCAG 2 cut(s) 249, 388
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 3 cut(s) 420, 732, 769
RsaI GTAC 4 cut(s) 185, 269, 462, 723
RsaNI GTAC 4 cut(s) 184, 268, 461, 722
SacI GAGCTC 1 cut(s) 658
SacII CCGCGG 2 cut(s) 502, 739
SaqAI TTAA 4 cut(s) 281, 528, 564, 726
SatI GCNGC 6 cut(s) 90, 297, 367, 384, 387, 739
Sau3AI GATC 6 cut(s) 54, 207, 420, 582, 732, 769
Sau96I GGNCC 2 cut(s) 26, 241
SchI GAGTC 2 cut(s) 96, 187
ScrFI CCNGG 4 cut(s) 176, 239, 272, 313
SduI GDGCHC 1 cut(s) 658
SfcI CTRYAG 2 cut(s) 245, 384
Sfr303I CCGCGG 2 cut(s) 502, 739
SgrBI CCGCGG 2 cut(s) 502, 739
SinI GGWCC 1 cut(s) 26
Sse9I AATT 2 cut(s) 372, 565
SsiI CCGC 9 cut(s) 9, 23, 297, 325, 366, 499, 501, 736, 738
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 658
StyD4I CCNGG 4 cut(s) 174, 237, 270, 311
StyI CCWWGG 2 cut(s) 648, 709
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 2 cut(s) 260, 697
TaqI TCGA 5 cut(s) 45, 146, 669, 753, 777
TasI AATT 2 cut(s) 372, 565
TatI WGTACW 1 cut(s) 183
TauI GCSGC 3 cut(s) 299, 369, 741
TfiI GAWTC 2 cut(s) 495, 838
Tru1I TTAA 4 cut(s) 281, 528, 564, 726
Tru9I TTAA 4 cut(s) 281, 528, 564, 726
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 3 cut(s) 89, 383, 386
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 349
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.