pycom16g16820

LAG1 longevity assurance homolog 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
12831030 .. 12831653
624 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGGTTTCTGGATATGTGCATCATAATTGTTTCAAGTCTTGGAGAATTGGTTCCTGCATTCTATTTGTAAGGCTCGTTAAGAAATGTTTGAATTCTACTGTTACTGCTCATATCCAGCCGTTTGCATGCTTAGGGTCCGTTGTATTAGCTCTTCATGATGATAGTGATGTGTTCCTGAAGATCGTACTGCAACTCATTTGCTATCCACTATGGATCCTTTGGAGTACAAGCTCTGGAGTCATCCTGACATTGGACAAGAGCAAACACTTTATGGATAGACCAATATTTTACTGTGTTAAATACTATCCTATACTACTACTTTTTCTTCACATTTTCTGGTGGGTCTTGATTTATCAGACGCTTGTTAAACAAATCCAAGCAATAGGCTATCTTAATGATAACCTTCGATCAGATAAAGTTTCACACTCTTTCACCTTCCTATCAAGGATGCTGGAAAAAGATTGCATATCAGCCTTTAAAGAATGA

Protein Analysis

162

Amino Acids

18.77

Weight (kDa)

8.98

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 208, 221
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 2 cut(s) 186, 226
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 34, 91
AloI GAACNNNNNNTCC 2 cut(s) 34, 66
AluBI AGCT 2 cut(s) 149, 231
AluI AGCT 2 cut(s) 149, 231
AlwI GGATC 2 cut(s) 208, 221
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BceAI ACGGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 52, 136, 215
BmsI GCATC 2 cut(s) 28, 438
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 240, 453
BseLI CCNNNNNNNGG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 250
BsmI GAATGC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 180, 213, 407
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 52, 136, 215
BspPI GGATC 2 cut(s) 208, 221
BspQI GCTCTTC 1 cut(s) 156
BssMI GATC 3 cut(s) 180, 213, 407
Bst4CI ACNGT 2 cut(s) 100, 293
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 240, 453
BstKTI GATC 3 cut(s) 183, 216, 410
BstMBI GATC 3 cut(s) 180, 213, 407
BstNSI RCATGY 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtsCI GGATG 2 cut(s) 240, 453
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 185, 225
CviAII CATG 2 cut(s) 126, 155
CviJI RGCY 6 cut(s) 73, 118, 149, 231, 387, 473
CviKI_1 RGCY 6 cut(s) 73, 118, 149, 231, 387, 473
CviQI GTAC 2 cut(s) 185, 225
DdeI CTNAG 1 cut(s) 130
DpnI GATC 3 cut(s) 182, 215, 409
DpnII GATC 3 cut(s) 180, 213, 407
DraI TTTAAA 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 91
FaeI CATG 2 cut(s) 129, 158
FaiI YATR 9 cut(s) 15, 24, 111, 127, 156, 211, 272, 311, 467
FatI CATG 2 cut(s) 125, 154
FokI GGATG 2 cut(s) 227, 460
GsuI CTGGAG 1 cut(s) 255
HgaI GACGC 1 cut(s) 367
Hin1II CATG 2 cut(s) 129, 158
HinfI GANTC 1 cut(s) 237
HphI GGTGA 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 357, 412
Hpy188III TCNNGA 6 cut(s) 9, 155, 175, 234, 244, 346
HpyAV CCTTC 2 cut(s) 413, 445
HpyCH4III ACNGT 2 cut(s) 100, 293
HpyCH4V TGCA 5 cut(s) 19, 57, 125, 190, 465
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 2 cut(s) 129, 158
Kzo9I GATC 3 cut(s) 180, 213, 407
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 7 cut(s) 67, 128, 188, 219, 257, 322, 437
LweI GCATC 2 cut(s) 28, 438
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 182, 215, 409
MboI GATC 3 cut(s) 180, 213, 407
MboII GAAGA 3 cut(s) 143, 190, 317
MflI RGATCY 1 cut(s) 213
MluCI AATT 3 cut(s) 25, 45, 91
MlyI GAGTC 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 5 cut(s) 78, 297, 366, 393, 477
Mva1269I GAATGC 1 cut(s) 57
NdeII GATC 3 cut(s) 180, 213, 407
NlaIII CATG 2 cut(s) 129, 158
NlaIV GGNNCC 3 cut(s) 52, 136, 215
NspI RCATGY 1 cut(s) 129
PaeI GCATGC 1 cut(s) 129
PagI TCATGA 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 49
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 52, 136, 215
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 186, 226
RsaNI GTAC 2 cut(s) 185, 225
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 5 cut(s) 78, 297, 366, 393, 477
Sau3AI GATC 3 cut(s) 180, 213, 407
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 246
SetI ASST 4 cut(s) 151, 233, 405, 437
SfaNI GCATC 2 cut(s) 28, 438
SinI GGWCC 1 cut(s) 135
SphI GCATGC 1 cut(s) 129
Sse9I AATT 3 cut(s) 25, 45, 91
SspI AATATT 1 cut(s) 285
TaaI ACNGT 2 cut(s) 100, 293
TaqI TCGA 1 cut(s) 406
TasI AATT 3 cut(s) 25, 45, 91
TatI WGTACW 1 cut(s) 224
Tru1I TTAA 5 cut(s) 78, 297, 366, 393, 477
Tru9I TTAA 5 cut(s) 78, 297, 366, 393, 477
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 91
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.