pycom16g16860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
12871052 .. 12872460
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGACAGGACAACACCGCAGGGAGAGGGTAAATGGGCAAGGCTTGCTTAAACCAAGGGAGAAGCGAAGAGAAGGGATGGAGACTTTGGAATTGACGAACCTTATTTGCTACAATTTCATCTTTCAATATTACAATGAACAAGAGGAGGAGCATGGTTATGCAGATGCTACTAGTGGTTCGGTTGCAGGTGGTGATCGTGACGGACAAAAAGGGCAAGCCATTTCCGCAAAGGCCAAGGATGACAGTAAGAGGCTTCCTTCTGCGTCGGGCAAGTTTGGAGAAAAAATTGAGAGAATTGTGGCGAGGGGTTTCAGAACTAGAGATAATTTTCAAATCGAATACCAAACAACTCCTAAGCTTCTTTCCAATTACATTGGAGATACTTTTACAAGACCTAATCAAACAAGAGTCCCACCCTTGACATACTCAGTGAAGGCCAAAGCAACCAAACCTAACATGGCCAACCTTCCGTTCCAGAGCTCAGCATCTGACGTCATGATCCCATTTGATTTGGACTCCACGCCGACTCCTTTGAAAAGAGGAATCACGGATGCAACTGAGAGCAAAATACTAGTTCCAAGGAACAACATAAACTACCGAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

9.49

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AatII GACGTC 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 176
AciI CCGC 2 cut(s) 16, 225
AclWI GGATC 1 cut(s) 493
AcoI YGGCCR 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 492
AgsI TTSAA 3 cut(s) 125, 332, 535
AhlI ACTAGT 2 cut(s) 170, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 358, 480, 602, 606
AluI AGCT 4 cut(s) 358, 480, 602, 606
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 493
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 231, 435, 459
AsuHPI GGTGA 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 602
BalI TGGCCA 1 cut(s) 461
BanII GRGCYC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 482
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 2 cut(s) 170, 571
BfaI CTAG 5 cut(s) 171, 318, 572, 603, 607
BfuAI ACCTGC 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 481
BmsI GCATC 3 cut(s) 154, 494, 541
BmtI GCTAGC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 53, 234, 578
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
BseDI CCNNGG 3 cut(s) 53, 234, 578
BseGI GGATG 3 cut(s) 81, 244, 556
BseMII CTCAG 3 cut(s) 441, 495, 549
BseRI GAGGAG 2 cut(s) 158, 161
BshFI GGCC 3 cut(s) 233, 437, 461
BsiHKAI GWGCWC 1 cut(s) 482
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 3 cut(s) 233, 437, 461
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 2 cut(s) 193, 498
Bsp1720I GCTNAGC 1 cut(s) 481
BspACI CCGC 2 cut(s) 16, 225
BspANI GGCC 3 cut(s) 233, 437, 461
BspCNI CTCAG 3 cut(s) 440, 494, 550
BspHI TCATGA 1 cut(s) 495
BspMI ACCTGC 1 cut(s) 176
BspOI GCTAGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 53, 234, 578
BssMI GATC 2 cut(s) 193, 498
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 3 cut(s) 53, 234, 578
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 3 cut(s) 44, 216, 604
BstDEI CTNAG 4 cut(s) 354, 427, 481, 558
BstF5I GGATG 3 cut(s) 81, 244, 556
BstKTI GATC 2 cut(s) 196, 501
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 193, 498
BstMWI GCNNNNNNNGC 2 cut(s) 43, 224
BsuRI GGCC 3 cut(s) 233, 437, 461
BtsCI GGATG 3 cut(s) 81, 244, 556
BtsIMutI CAGTG 1 cut(s) 435
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 44, 216, 604
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 495
CseI GACGC 1 cut(s) 252
CviAII CATG 3 cut(s) 152, 457, 496
DdeI CTNAG 4 cut(s) 354, 427, 481, 558
DpnI GATC 2 cut(s) 195, 500
DpnII GATC 2 cut(s) 193, 498
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 480
Eco130I CCWWGG 3 cut(s) 53, 234, 578
Eco24I GRGCYC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 480
EcoT14I CCWWGG 3 cut(s) 53, 234, 578
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 3 cut(s) 53, 234, 578
FaeI CATG 3 cut(s) 155, 460, 499
FaiI YATR 6 cut(s) 153, 159, 424, 458, 497, 590
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 395
FatI CATG 3 cut(s) 151, 456, 495
FokI GGATG 3 cut(s) 88, 251, 563
FriOI GRGCYC 1 cut(s) 482
FspBI CTAG 5 cut(s) 171, 318, 572, 603, 607
HaeIII GGCC 3 cut(s) 233, 437, 461
HgaI GACGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 3 cut(s) 155, 460, 499
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 4 cut(s) 408, 515, 526, 543
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 314, 490
Hpy188III TCNNGA 3 cut(s) 197, 475, 496
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 4 cut(s) 65, 267, 427, 476
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 161, 185, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 224
HpyF3I CTNAG 4 cut(s) 354, 427, 481, 558
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 3 cut(s) 155, 460, 499
Kzo9I GATC 2 cut(s) 193, 498
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 4, 171, 488
LweI GCATC 3 cut(s) 154, 494, 541
MaeI CTAG 5 cut(s) 171, 318, 572, 603, 607
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 195, 500
MboI GATC 2 cut(s) 193, 498
MboII GAAGA 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 6 cut(s) 89, 112, 285, 294, 325, 367
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 3 cut(s) 417, 509, 520
MnlI CCTC 6 cut(s) 18, 136, 139, 243, 297, 533
Mox20I TGGCCA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 43, 224
NdeII GATC 2 cut(s) 193, 498
NheI GCTAGC 1 cut(s) 602
NlaIII CATG 3 cut(s) 155, 460, 499
NmuCI GTSAC 1 cut(s) 197
PagI TCATGA 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 543
PleI GAGTC 3 cut(s) 416, 509, 520
PpsI GAGTC 3 cut(s) 416, 509, 520
Psp124BI GAGCTC 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 488
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 2 cut(s) 193, 498
SchI GAGTC 3 cut(s) 417, 509, 520
SduI GDGCHC 1 cut(s) 482
SfaNI GCATC 3 cut(s) 154, 494, 541
SmiMI CAYNNNNRTG 1 cut(s) 156
SpeI ACTAGT 2 cut(s) 170, 571
Sse9I AATT 6 cut(s) 89, 112, 285, 294, 325, 367
SsiI CCGC 2 cut(s) 16, 225
SspI AATATT 1 cut(s) 128
SspMI CTAG 5 cut(s) 171, 318, 572, 603, 607
SstI GAGCTC 1 cut(s) 482
StyI CCWWGG 3 cut(s) 53, 234, 578
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 336
TasI AATT 6 cut(s) 89, 112, 285, 294, 325, 367
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 106, 150
TspGWI ACGGA 3 cut(s) 216, 459, 563
TspRI CASTG 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XspI CTAG 5 cut(s) 171, 318, 572, 603, 607
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.