pycom16g17020

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
13041388 .. 13041614
227 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGGGGATTCAGGGCACTGAAGTTGCTAAGGAGAGCTCAGACATTATGGGGAAGAGGAGATTCTGCCAACATCCAAAAATTTGTCCAATTCCAGCTCACAATAAATGTTGCAGCTCTTGTGATCAACTTTGTGCAGCTGCCTTGGCCAGTGAAGTACCTTTAACAACAGTCCAGCTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

61

Amino Acids

6.43

Weight (kDa)

7.6

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 156
AluBI AGCT 5 cut(s) 36, 95, 114, 137, 175
AluI AGCT 5 cut(s) 36, 95, 114, 137, 175
Alw21I GWGCWC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 178
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 111, 134, 137, 175
ApoI RAATTY 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 146
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 4 cut(s) 123, 124, 146, 162
BclI TGATCA 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 4 cut(s) 112, 135, 138, 176
BlsI GCNGC 4 cut(s) 113, 136, 139, 177
Bpu10I CCTNAGC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 4 cut(s) 123, 124, 146, 162
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 38
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 17, 38
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 50
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 27, 37
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 4 cut(s) 123, 124, 146, 162
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 15, 154
CaiI CAGNNNCTG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 155
CviJI RGCY 6 cut(s) 36, 95, 114, 137, 146, 175
CviKI_1 RGCY 6 cut(s) 36, 95, 114, 137, 146, 175
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 2 cut(s) 27, 37
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 1 cut(s) 47
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 112, 135, 138, 176
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 112, 135, 138, 176
GluI GCNGC 4 cut(s) 112, 135, 138, 176
HaeIII GGCC 1 cut(s) 146
HinfI GANTC 2 cut(s) 7, 60
Hpy188I TCNGA 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 111, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 27, 37
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 105, 160
Lsp1109I GCAGC 4 cut(s) 123, 124, 146, 162
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 17, 38
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 2 cut(s) 78, 87
MluNI TGGCCA 1 cut(s) 146
MnlI CCTC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 2 cut(s) 137, 175
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 7, 60
PkrI GCNGC 4 cut(s) 113, 136, 139, 177
Psp124BI GAGCTC 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 178
PvuII CAGCTG 2 cut(s) 137, 175
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 4 cut(s) 112, 135, 138, 176
Sau3AI GATC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 17, 38
SetI ASST 6 cut(s) 38, 97, 116, 139, 160, 177
SfcI CTRYAG 1 cut(s) 179
SgeI CNNG 5 cut(s) 23, 104, 129, 154, 159
Sse9I AATT 2 cut(s) 78, 87
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 169
TasI AATT 2 cut(s) 78, 87
TfiI GAWTC 2 cut(s) 7, 60
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 2 cut(s) 22, 154
TseI GCWGC 4 cut(s) 111, 134, 137, 175
TspRI CASTG 2 cut(s) 22, 154
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.