Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13421909 .. 13422208

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGATTGTTTCTGATTCAATTCTTTCTGTTACTAGTAGTTCATTTTCTAATTGGCTAGATATGAACTGGTTTGTAACGGGTCATCAAAGTGGGGCTGTTAAGGTATGGCAAATGGTTTATCCCACAAACCTCAAGAGTTTTCAACAGAAATCAATGAGCAATGAGATGGGTGGTTTAAATCTCAATGATAAGCACCATAGTACAAGTTTGGTGAAATGGGTATGTGTTTTGTTCTATGTAAATTGTTATGCGTTGAGAAAGATTACAGTCACGACACATTGTAATTCTTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

100

Amino Acids

11.26

Weight (kDa)

8.77

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	21, 146
AhlI	ACTAGT	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	226
BccI	CCATC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 59
BpuEI	CTTGAG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	204
CviJI	RGCY	2 cut(s)	58, 98
CviKI_1	RGCY	2 cut(s)	58, 98
CviQI	GTAC	1 cut(s)	204
DraI	TTTAAA	1 cut(s)	180
FaiI	YATR	6 cut(s)	65, 109, 201, 226, 240, 252
FspBI	CTAG	2 cut(s)	36, 59
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	136, 274
HpyCH4III	ACNGT	1 cut(s)	271
LpnPI	CCDG	1 cut(s)	55
MaeI	CTAG	2 cut(s)	36, 59
MaeIII	GTNAC	3 cut(s)	31, 76, 271
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	4 cut(s)	21, 52, 244, 286
MnlI	CCTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	102, 179
MslI	CAYNNNNRTG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	102, 179
SetI	ASST	2 cut(s)	108, 135
SgeI	CNNG	7 cut(s)	48, 71, 82, 93, 148, 219, 286
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	4 cut(s)	21, 52, 244, 286
SspMI	CTAG	2 cut(s)	36, 59
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	4 cut(s)	21, 52, 244, 286
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	102, 179
Tru9I	TTAA	2 cut(s)	102, 179
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	17, 33, 80
XspI	CTAG	2 cut(s)	36, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.