Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13468927 .. 13470284

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGATGCAAATGCTCTTGCCAAACATCCATGTGGTCCCATTTCACATGGGAATGCTCCCCCCAACTCTTCCCTTACCATTAAAAGTCCAGATTGCATCCCACGATCCCCCAACGCACCTTGACCGTCCTTTTGAGTTCATAATTTTGCATAGGGGTTGGCTGAGCTTGTCCAACTCTTGTCGCCCAAACGCCGAGGCAAAATGCCTCAAAGTCATGCAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGTAACAAATTAAACAAAAACAAATTTAAGGCATACTGCACAACTCCCGCTTCTTCCTTCAATCATATCTATAAAGTACAACACACACCTTGCATTCCCACATCCCACAAATCATACACATTTCTCAAACCTCTCCGTAGCAGAAAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGGGGAAGAAAAAAAGAAAGGGAAAATTTTGCCTCAACCAGAAAGAAGAACTTGGTTCTTTTGGGTTTTGCTAGAGCAGATTACCGGATTTTGTTTCTTGAGGTTCAAGAATTCGTTTTTTCTTTTCAGTCGAAGATTGTTGGGAAAAATGGAAGGCAAGGCTCATGAGAATGATCTCAACCTCAAGGCAACAGAGCTGACACTAGGGTTGCCAGGGAGAGATGAAATTAGTGACCTTCCTAATCAAACCAAGAAGAGATCACCGCCAGCTGATTTAAAAAATGAAGAAGGAAACCCTGATGCTAAAAATGCCCAAAAGGGAACTGCTCCTCCTGCAAAGGAACAAATAGTGGGGTGGCCACCAATCAGATCTTATAGGAAGAACAGCCTCCAGGTAAATAAGAATACTGAGGCTGAAACTGTTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACCTTAGGGTTTACAAATGCTACCCAGAACTCCTCAAGGCCTTAGAAGTCATGTTTAAGTTTACTATAGGCCAATACTCAGAGAGGGAAGGCTATTTGGCAAAGATCGATCAGAATATGCACCTACTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGATATGTTCATGTCATCCTGCAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

371

Amino Acids

42.92

Weight (kDa)

9.88

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	138 - 333	4.6e-31	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	297, 692
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	785
AcsI	RAATTY	3 cut(s)	272, 453, 538
AfaI	GTAC	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	310, 535
AjnI	CCWGG	2 cut(s)	640, 819
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
AluBI	AGCT	3 cut(s)	168, 625, 698
AluI	AGCT	3 cut(s)	168, 625, 698
Alw21I	GWGCWC	1 cut(s)	889
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	785, 945, 976
ApoI	RAATTY	3 cut(s)	272, 453, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	16, 681, 1063
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	911
BalI	TGGCCA	1 cut(s)	787
Bbv12I	GWGCWC	1 cut(s)	889
BccI	CCATC	2 cut(s)	875, 1042
BciT130I	CCWGG	2 cut(s)	642, 821
BfaI	CTAG	2 cut(s)	500, 632
BfmI	CTRYAG	1 cut(s)	972
BglII	AGATCT	1 cut(s)	797
BlpI	GCTNAGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	642, 821
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	642, 821
BmsI	GCATC	3 cut(s)	107, 718, 1049
BpmI	CTGGAG	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	3 cut(s)	547, 596, 926
Bsa29I	ATCGAT	1 cut(s)	1014
BsaJI	CCNNGG	3 cut(s)	195, 641, 1078
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bse21I	CCTNAGG	1 cut(s)	911
BseBI	CCWGG	2 cut(s)	642, 821
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	3 cut(s)	195, 641, 1078
BseGI	GGATG	6 cut(s)	27, 98, 350, 886, 1064, 1096
BseMII	CTCAG	4 cut(s)	155, 828, 910, 999
BseRI	GAGGAG	2 cut(s)	747, 929
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	787, 947, 978
BshVI	ATCGAT	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	2 cut(s)	60, 342
BsnI	GGCC	3 cut(s)	787, 947, 978
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
Bsp1720I	GCTNAGC	1 cut(s)	164
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	2 cut(s)	297, 692
BspANI	GGCC	3 cut(s)	787, 947, 978
BspCNI	CTCAG	4 cut(s)	156, 829, 909, 998
BspDI	ATCGAT	1 cut(s)	1014
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	195, 641, 1078
BssMI	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
BssT1I	CCWWGG	1 cut(s)	1078
Bst2UI	CCWGG	2 cut(s)	642, 821
Bst4CI	ACNGT	2 cut(s)	128, 850
Bst6I	CTCTTC	2 cut(s)	75, 677
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	6 cut(s)	164, 837, 896, 911, 949, 985
BstDSI	CCRYGG	1 cut(s)	1078
BstF5I	GGATG	6 cut(s)	27, 98, 350, 886, 1064, 1096
BstKTI	GATC	6 cut(s)	109, 604, 689, 800, 1014, 1018
BstMBI	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 761
BstNI	CCWGG	2 cut(s)	642, 821
BstSCI	CCNGG	2 cut(s)	640, 819
BstSFI	CTRYAG	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
Bsu15I	ATCGAT	1 cut(s)	1014
Bsu36I	CCTNAGG	1 cut(s)	911
BsuRI	GGCC	3 cut(s)	787, 947, 978
BsuTUI	ATCGAT	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	1078
BtsCI	GGATG	6 cut(s)	27, 98, 350, 886, 1064, 1096
Cac8I	GCNNGC	1 cut(s)	696
CciI	TCATGA	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	1014
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	8 cut(s)	32, 49, 217, 593, 877, 958, 1079, 1092
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	6 cut(s)	164, 837, 896, 911, 949, 985
DpnI	GATC	6 cut(s)	108, 603, 688, 799, 1013, 1017
DpnII	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
DraI	TTTAAA	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	75, 677
EarI	CTCTTC	2 cut(s)	75, 677
Eco130I	CCWWGG	1 cut(s)	1078
Eco147I	AGGCCT	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	911
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	640, 819
EcoT14I	CCWWGG	1 cut(s)	1078
ErhI	CCWWGG	1 cut(s)	1078
FaeI	CATG	8 cut(s)	35, 52, 220, 596, 880, 961, 1082, 1095
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	8 cut(s)	31, 48, 216, 592, 876, 957, 1078, 1091
FauI	CCCGC	1 cut(s)	304
FokI	GGATG	6 cut(s)	14, 85, 337, 893, 1071, 1083
FspBI	CTAG	2 cut(s)	500, 632
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	787, 947, 978
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	8 cut(s)	35, 52, 220, 596, 880, 961, 1082, 1095
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	3 cut(s)	16, 681, 1063
Hpy166II	GTNNAC	2 cut(s)	919, 969
Hpy188I	TCNGA	4 cut(s)	797, 899, 988, 1020
Hpy188III	TCNNGA	4 cut(s)	91, 526, 535, 593
Hpy8I	GTNNAC	2 cut(s)	919, 969
HpyAV	CCTTC	6 cut(s)	316, 421, 575, 674, 710, 989
HpyCH4III	ACNGT	2 cut(s)	128, 850
HpyCH4V	TGCA	9 cut(s)	10, 98, 151, 220, 288, 342, 764, 1027, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 761
HpyF3I	CTNAG	6 cut(s)	164, 837, 896, 911, 949, 985
Hsp92II	CATG	8 cut(s)	35, 52, 220, 596, 880, 961, 1082, 1095
Kzo9I	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
LmnI	GCTCC	3 cut(s)	63, 760, 884
LweI	GCATC	3 cut(s)	107, 718, 1049
MaeI	CTAG	2 cut(s)	500, 632
MaeIII	GTNAC	2 cut(s)	251, 659
MalI	GATC	6 cut(s)	108, 603, 688, 799, 1013, 1017
MboI	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
MboII	GAAGA	8 cut(s)	62, 294, 446, 486, 573, 694, 725, 820
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	1 cut(s)	889
MlsI	TGGCCA	1 cut(s)	787
MluCI	AATT	6 cut(s)	144, 257, 272, 453, 538, 654
MluNI	TGGCCA	1 cut(s)	787
MmeI	TCCRAC	2 cut(s)	198, 1047
Mox20I	TGGCCA	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	787
MseI	TTAA	5 cut(s)	83, 260, 276, 704, 963
MslI	CAYNNNNRTG	4 cut(s)	32, 53, 221, 597
Msp20I	TGGCCA	1 cut(s)	787
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	642, 821
Mva1269I	GAATGC	2 cut(s)	60, 342
MvaI	CCWGG	2 cut(s)	642, 821
MwoI	GCNNNNNNNGC	2 cut(s)	737, 761
NcoI	CCATGG	1 cut(s)	1078
NdeII	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
NlaIII	CATG	8 cut(s)	35, 52, 220, 596, 880, 961, 1082, 1095
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	659
PagI	TCATGA	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	947
PctI	GAATGC	2 cut(s)	60, 342
Psp6I	CCWGG	2 cut(s)	640, 819
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	640, 819
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	797
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	4 cut(s)	32, 53, 221, 597
SaqAI	TTAA	5 cut(s)	83, 260, 276, 704, 963
Sau3AI	GATC	6 cut(s)	106, 601, 686, 797, 1011, 1015
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	642, 821
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	3 cut(s)	107, 718, 1049
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	4 cut(s)	32, 53, 221, 597
SmlI	CTYRAG	3 cut(s)	526, 611, 941
SmoI	CTYRAG	3 cut(s)	526, 611, 941
Sse9I	AATT	6 cut(s)	144, 257, 272, 453, 538, 654
SseBI	AGGCCT	1 cut(s)	947
SsiI	CCGC	2 cut(s)	297, 692
SspMI	CTAG	2 cut(s)	500, 632
StuI	AGGCCT	1 cut(s)	947
StyD4I	CCNGG	2 cut(s)	640, 819
StyI	CCWWGG	1 cut(s)	1078
TaaI	ACNGT	2 cut(s)	128, 850
TaqI	TCGA	2 cut(s)	559, 1014
TasI	AATT	6 cut(s)	144, 257, 272, 453, 538, 654
TatI	WGTACW	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	83, 260, 276, 704, 963
Tru9I	TTAA	5 cut(s)	83, 260, 276, 704, 963
TseFI	GTSAC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	130, 666, 726, 1080
TspGWI	ACGGA	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	3 cut(s)	272, 453, 538
XspI	CTAG	2 cut(s)	500, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.