Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13807916 .. 13809861

Gene Structure 1946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTATTATTTAGTACTCCGCCCATTGTGAGATTAAGCCCACCCTCTATCCTTAGTAATTCCCGCAATTTGAATCCGGATGAAATCCATATCCGTCAGACCCTTGGGGTTAAACACAAAACCAGAGCCGCCAGCACCACACAATCGAGATTATATAAATTCAGCTTGAAAAGAAAAACCTCTTTGCATCAGAAAACCCTAGCGGCCACTCACAGATCCGAATTCTTCCAAGCTTTGCTCCCGCCTAGCGTTTCCGATACCGAAAGCTACACCATGGCTGACGTTGAGGCCGATGTTGCGGCGGCCGGAGTTCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGGGGCGTCGATTTGGATGCTCTGCTCGACATGTCCACTGATGAGCTTGTCAAGCTCTTCCCTGCCAGAGCGCGCAGAAGGTTTCAGAGGGGTCTGAAGCGCAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAAGCGAAAAGAGAGGCTCCACCCGGTGAAAAGCCAGAACCAGTCCGTACTCACCTGCGTAACATGATTATAGTTCCGGAAATGATTGGAAGCATCATTGGAGTGTACAATGGTAAGACCTTCAATCAGGTTGAAATCAAGCCTGAGATGATCAGCCACTACCTTGCTGAGTTCTCAATCTCATACAAGCCTGTGAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

244

Amino Acids

27.45

Weight (kDa)

10.59

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	141 - 226	1e-32	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	540
Acc16I	TGCGCA	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	682
AccII	CGCG	1 cut(s)	418
AccIII	TCCGGA	2 cut(s)	76, 553
AciI	CCGC	7 cut(s)	20, 64, 129, 203, 242, 299, 302
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	2 cut(s)	204, 303
AcsI	RAATTY	2 cut(s)	158, 221
AcuI	CTGAAG	2 cut(s)	328, 461
AcyI	GRCGYC	1 cut(s)	351
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	16, 526, 584
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflII	CTTAAG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	6 cut(s)	73, 169, 331, 601, 611, 711
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	7 cut(s)	165, 233, 267, 342, 391, 400, 472
AluI	AGCT	7 cut(s)	165, 233, 267, 342, 391, 400, 472
AlwI	GGATC	1 cut(s)	210
Aor13HI	TCCGGA	2 cut(s)	76, 553
AoxI	GGCC	3 cut(s)	204, 288, 303
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	2 cut(s)	158, 221
AspLEI	GCGC	4 cut(s)	418, 420, 447, 477
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	515, 521
BanI	GGYRCC	1 cut(s)	695
BbvI	GCAGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	2 cut(s)	462, 627
BcnI	CCSGG	1 cut(s)	501
BfaI	CTAG	2 cut(s)	200, 246
BfrI	CTTAAG	1 cut(s)	725
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	5 cut(s)	129, 204, 300, 303, 473
BlsI	GCNGC	5 cut(s)	130, 205, 301, 304, 474
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	501, 687
BmiI	GGNNCC	2 cut(s)	495, 697
BmrFI	CCNGG	2 cut(s)	501, 687
BmsI	GCATC	3 cut(s)	196, 352, 579
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	103, 273
BsaWI	WCCGGW	2 cut(s)	76, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	518
BseAI	TCCGGA	2 cut(s)	76, 553
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	103, 273
BseGI	GGATG	2 cut(s)	85, 367
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	612, 636
BseNI	ACTGG	1 cut(s)	518
BsePI	GCGCGC	1 cut(s)	416
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	418
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	206, 290, 305
BshNI	GGYRCC	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	306
BsiSI	CCGG	4 cut(s)	77, 306, 501, 554
BslI	CCNNNNNNNGG	1 cut(s)	692
BsnI	GGCC	3 cut(s)	206, 290, 305
Bsp13I	TCCGGA	2 cut(s)	76, 553
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	215, 462, 627
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	7 cut(s)	20, 64, 129, 203, 242, 299, 302
BspANI	GGCC	3 cut(s)	206, 290, 305
BspCNI	CTCAG	2 cut(s)	613, 637
BspEI	TCCGGA	2 cut(s)	76, 553
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	495, 697
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	695
BspTI	CTTAAG	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	103, 273
BssHII	GCGCGC	1 cut(s)	416
BssMI	GATC	3 cut(s)	215, 462, 627
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	103, 273
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	680
Bst6I	CTCTTC	3 cut(s)	314, 407, 712
BstACI	GRCGYC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	3 cut(s)	133, 418, 449
BstDEI	CTNAG	3 cut(s)	53, 621, 645
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	85, 367
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	4 cut(s)	418, 420, 447, 477
BstKTI	GATC	3 cut(s)	218, 465, 630
BstMBI	GATC	3 cut(s)	215, 462, 627
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 348, 397, 673
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	499, 685
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	206, 290, 305
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	85, 367
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	133, 418, 449
CfoI	GCGC	4 cut(s)	418, 420, 447, 477
CseI	GACGC	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	15, 525, 583
CviAII	CATG	3 cut(s)	274, 376, 541
CviQI	GTAC	3 cut(s)	15, 525, 583
DdeI	CTNAG	3 cut(s)	53, 621, 645
DpnI	GATC	3 cut(s)	217, 464, 629
DpnII	GATC	3 cut(s)	215, 462, 627
DraIII	CACNNNGTG	1 cut(s)	503
EaeI	YGGCCR	2 cut(s)	204, 303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	314, 407, 712
EarI	CTCTTC	3 cut(s)	314, 407, 712
EciI	GGCGGA	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	103, 273
Eco52I	CGGCCG	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	328, 461
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	103, 273
ErhI	CCWWGG	2 cut(s)	103, 273
FaeI	CATG	3 cut(s)	277, 379, 544
FaiI	YATR	9 cut(s)	90, 154, 156, 275, 377, 455, 542, 548, 661
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	3 cut(s)	273, 375, 540
FauI	CCCGC	2 cut(s)	71, 249
FbaI	TGATCA	2 cut(s)	462, 627
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	129, 204, 300, 303, 473
FokI	GGATG	2 cut(s)	92, 374
Fsp4HI	GCNGC	5 cut(s)	129, 204, 300, 303, 473
FspBI	CTAG	2 cut(s)	200, 246
FspI	TGCGCA	1 cut(s)	476
GlaI	GCGC	4 cut(s)	417, 419, 446, 476
GluI	GCNGC	5 cut(s)	129, 204, 300, 303, 473
HaeIII	GGCC	3 cut(s)	206, 290, 305
HapII	CCGG	4 cut(s)	77, 306, 501, 554
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	4 cut(s)	418, 420, 447, 477
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	277, 379, 544
Hin6I	GCGC	4 cut(s)	416, 418, 445, 475
HinP1I	GCGC	4 cut(s)	416, 418, 445, 475
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	4 cut(s)	77, 306, 501, 554
HphI	GGTGA	2 cut(s)	515, 521
Hpy166II	GTNNAC	3 cut(s)	381, 583, 683
Hpy188I	TCNGA	7 cut(s)	99, 192, 220, 256, 315, 432, 441
Hpy188III	TCNNGA	5 cut(s)	77, 147, 331, 466, 554
Hpy8I	GTNNAC	3 cut(s)	381, 583, 683
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	417, 607
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 348, 397, 673
HpyF3I	CTNAG	3 cut(s)	53, 621, 645
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	277, 379, 544
HspAI	GCGC	4 cut(s)	416, 418, 445, 475
Kpn2I	TCCGGA	2 cut(s)	76, 553
Ksp22I	TGATCA	2 cut(s)	462, 627
Kzo9I	GATC	3 cut(s)	215, 462, 627
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	2 cut(s)	243, 499
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	3 cut(s)	196, 352, 579
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	2 cut(s)	200, 246
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	217, 464, 629
MboI	GATC	3 cut(s)	215, 462, 627
MboII	GAAGA	5 cut(s)	217, 328, 331, 394, 699
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	4 cut(s)	58, 67, 158, 221
MnlI	CCTC	6 cut(s)	55, 190, 280, 426, 484, 732
MroI	TCCGGA	2 cut(s)	76, 553
MseI	TTAA	3 cut(s)	35, 111, 726
MslI	CAYNNNNRTG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	4 cut(s)	77, 306, 501, 554
MspR9I	CCNGG	2 cut(s)	501, 687
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	296, 348, 397, 673
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	215, 462, 627
NlaIII	CATG	3 cut(s)	277, 379, 544
NlaIV	GGNNCC	2 cut(s)	495, 697
NsbI	TGCGCA	1 cut(s)	476
NspI	RCATGY	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	540
PauI	GCGCGC	1 cut(s)	416
PciI	ACATGT	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	130, 205, 301, 304, 474
PscI	ACATGT	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	495, 697
PsuI	RGATCY	1 cut(s)	215
PteI	GCGCGC	1 cut(s)	416
RsaI	GTAC	3 cut(s)	16, 526, 584
RsaNI	GTAC	3 cut(s)	15, 525, 583
RseI	CAYNNNNRTG	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	35, 111, 726
SatI	GCNGC	5 cut(s)	129, 204, 300, 303, 473
Sau3AI	GATC	3 cut(s)	215, 462, 627
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	501, 687
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	196, 352, 579
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	58, 67, 158, 221
SsiI	CCGC	7 cut(s)	20, 64, 129, 203, 242, 299, 302
SspMI	CTAG	2 cut(s)	200, 246
StyD4I	CCNGG	2 cut(s)	499, 685
StyI	CCWWGG	2 cut(s)	103, 273
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	146, 354, 372
TasI	AATT	4 cut(s)	58, 67, 158, 221
TatI	WGTACW	2 cut(s)	14, 582
TauI	GCSGC	4 cut(s)	131, 206, 302, 305
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	35, 111, 726
Tru9I	TTAA	3 cut(s)	35, 111, 726
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	96, 706
TspGWI	ACGGA	2 cut(s)	83, 512
TspRI	CASTG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	725
XapI	RAATTY	2 cut(s)	158, 221
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	2 cut(s)	200, 246
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.