Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15427165 .. 15428631

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGAAGTGGGAATAAAAGGGGTGCTATCGCAATATCCTTGAGATCTTCGGAAGTGAGTGATCGGTTGCATACTGATACAAGTGAAGGCAGCTGCAAATTGGAAGTCAAAGTCTTCCAAGTTGTGCCTTGGTATATTAAGGTTTATTATCATACACTGCAAGTGATTGTTGATGAACAACCTCAAGCAGTTTCAGATGTAGTTGAAAAGATGCGTGTTTCACCTTCTGTAGACAAGGTGTCACCTGGGGTGATGGAGATGGTCCTGAAATTCCCTTGTGGAATGAAATCAGCTGCTATAATCTCAGATTTTGATAAGGGCTTTTTGCATATTGATGAATATCCGCCAGATGCCAATCAAGGATTTGATATTCCATCAGCCATAATAAGCTTTCCCCACTTCCATACAAACATACATTTTTTCAAAGATAAATCTGTGGATAAGTCGTCCATCTTATCCAGATTCCAGGAAAACAGCGCTGTTCTGGCATACACAGAAGTATTACTTGTACCCTTGACAACACCCGATTTTAGCATGCCTTACAATGTTATCACAATTACATGCACTATCTATGCTTTGTATTTTGGTGCTTTGCTCAATGTGCTTCGAAGGCGTGTTGGCGAGGAGGAAAGACTTGCGAAGAGCAAAGATGCCAATAAACCTGGTCGGCTCCTTCAGCTGCGATCTAGGTTGCCTGCTAAGCTTAGAGGAAGACCATACCAGCCACCTCGTCAATCCACCACTTCATCATCCTTCATCAGTCGAAAACTGATACTTTTTATCCTTGTGGCTGGGATTGGTGTCTATTGGCAAATTTATTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0019538 GO:0019637 GO:0022008 GO:0030154 GO:0030176 GO:0030182 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051402 GO:0070997 GO:0071704 GO:0090407 GO:0097708 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi16

Protein Analysis

276

Amino Acids

30.98

Weight (kDa)

9.12

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gpi16	PF04113	1 - 220	4.6e-65	Gpi16 subunit, GPI transamidase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	269, 813
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	510
AfeI	AGCGCT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	206, 424, 824
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	3 cut(s)	244, 465, 661
AluBI	AGCT	5 cut(s)	93, 293, 390, 679, 703
AluI	AGCT	5 cut(s)	93, 293, 390, 679, 703
Aor51HI	AGCGCT	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	90, 93, 293, 679
ApoI	RAATTY	2 cut(s)	269, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	213, 234, 262
AsuII	TTCGAA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	106, 718
BbvI	GCAGC	4 cut(s)	80, 102, 280, 666
BccI	CCATC	4 cut(s)	247, 253, 382, 458
BciT130I	CCWGG	3 cut(s)	246, 467, 663
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	480
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	4 cut(s)	91, 94, 294, 680
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	4 cut(s)	92, 95, 295, 681
Bme1390I	CCNGG	3 cut(s)	246, 467, 663
Bme18I	GGWCC	1 cut(s)	262
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	3 cut(s)	246, 467, 663
BmsI	GCATC	3 cut(s)	201, 340, 640
BpiI	GAAGAC	2 cut(s)	106, 718
Bpu1102I	GCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	607
BpuEI	CTTGAG	2 cut(s)	61, 168
BsaBI	GATNNNNATC	2 cut(s)	339, 354
BsaJI	CCNNGG	2 cut(s)	128, 245
Bse8I	GATNNNNATC	2 cut(s)	339, 354
BseBI	CCWGG	3 cut(s)	246, 467, 663
BseDI	CCNNGG	2 cut(s)	128, 245
BseGI	GGATG	1 cut(s)	749
BseJI	GATNNNNATC	2 cut(s)	339, 354
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	80, 102, 280, 666
BseYI	CCCAGC	1 cut(s)	791
Bsp119I	TTCGAA	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	44, 61, 683
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	128, 245
BssMI	GATC	3 cut(s)	44, 61, 683
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	3 cut(s)	246, 467, 663
Bst6I	CTCTTC	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	536, 696
BstDEI	CTNAG	3 cut(s)	304, 699, 704
BstF5I	GGATG	1 cut(s)	749
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	3 cut(s)	47, 64, 686
BstMBI	GATC	3 cut(s)	44, 61, 683
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 601, 610, 676, 700
BstNI	CCWGG	3 cut(s)	246, 467, 663
BstNSI	RCATGY	2 cut(s)	538, 564
BstSCI	CCNGG	3 cut(s)	244, 465, 661
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	80, 102, 280, 666
BstV2I	GAAGAC	2 cut(s)	106, 718
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	749
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	536, 696
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	2 cut(s)	535, 561
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	304, 699, 704
DpnI	GATC	3 cut(s)	46, 63, 685
DpnII	GATC	3 cut(s)	44, 61, 683
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	635
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	635
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	244, 465, 661
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	538, 564
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	2 cut(s)	534, 560
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	91, 94, 294, 680
FokI	GGATG	1 cut(s)	736
Fsp4HI	GCNGC	4 cut(s)	91, 94, 294, 680
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	4 cut(s)	91, 94, 294, 680
GsaI	CCCAGC	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	480
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	538, 564
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HindIII	AAGCTT	2 cut(s)	388, 701
HinfI	GANTC	1 cut(s)	462
HphI	GGTGA	3 cut(s)	213, 234, 262
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	52, 196, 307
Hpy188III	TCNNGA	2 cut(s)	265, 459
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	80, 234, 603, 683, 763
HpyCH4V	TGCA	5 cut(s)	70, 96, 160, 328, 564
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 601, 610, 676, 700
HpyF3I	CTNAG	3 cut(s)	304, 699, 704
Hsp92II	CATG	2 cut(s)	538, 564
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	3 cut(s)	44, 61, 683
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	4 cut(s)	80, 102, 280, 666
LweI	GCATC	3 cut(s)	201, 340, 640
MabI	ACCWGGT	1 cut(s)	661
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	3 cut(s)	46, 63, 685
MboI	GATC	3 cut(s)	44, 61, 683
MboII	GAAGA	4 cut(s)	39, 106, 652, 723
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	4 cut(s)	98, 269, 555, 813
MnlI	CCTC	5 cut(s)	192, 616, 619, 701, 738
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	3 cut(s)	93, 293, 679
MspR9I	CCNGG	3 cut(s)	246, 467, 663
MvaI	CCWGG	3 cut(s)	246, 467, 663
MwoI	GCNNNNNNNGC	5 cut(s)	485, 601, 610, 676, 700
NdeII	GATC	3 cut(s)	44, 61, 683
NlaIII	CATG	2 cut(s)	538, 564
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	538, 564
NspV	TTCGAA	1 cut(s)	607
PaeI	GCATGC	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	92, 95, 295, 681
Psp6I	CCWGG	3 cut(s)	244, 465, 661
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	3 cut(s)	244, 465, 661
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	3 cut(s)	93, 293, 679
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	91, 94, 294, 680
Sau3AI	GATC	3 cut(s)	44, 61, 683
Sau96I	GGNCC	1 cut(s)	262
ScrFI	CCNGG	3 cut(s)	246, 467, 663
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	3 cut(s)	201, 340, 640
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	607
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	40, 183
SmoI	CTYRAG	2 cut(s)	40, 183
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	4 cut(s)	98, 269, 555, 813
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	3 cut(s)	244, 465, 661
StyI	CCWWGG	1 cut(s)	128
TaqI	TCGA	2 cut(s)	607, 763
TasI	AATT	4 cut(s)	98, 269, 555, 813
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	4 cut(s)	90, 93, 293, 679
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	5 cut(s)	189, 299, 351, 735, 745
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	2 cut(s)	269, 813
XceI	RCATGY	2 cut(s)	538, 564
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.