Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16233108 .. 16234158

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACCACCGCACGAGTTAGAGTCTTAGACGTCACCCCACACTGCTCCAAGAAAAGTGCAACCTCCAAGTCAAAACACAGTCTCTCTCCTCCCCCTCCGCCCCCGCCCCCCCCCCCCCCCCCCAAATATTTATACCGTACAACAAATATCCGACGCCAACTACACTTCTACAGGGAGCAGACTACTCCAACTTCACCTCTCTCTCCCTTCCTTCTCTCGCTTACTGCTCCAATGGCGACGTGGGCAACACTAGACTGCTCGGCCACCCAGCTGGCCGACCTCCTGGGGCCCAACTCCACCGGCGCAGCTCACTTCATCTGCGACCAAATCGCCGGCGTCTCCACCAAGCTCTCCGACACCGCCTACGCCGTCGACACCACCTACCTCCTCTTCTCCGCTTACCTTGTCTTCTCAATGCAGCTCGGGTTCGCCATGCTCTGTGCTGGCTCCGTCCGCGCAAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCGTTCGCCTTCGGCGGCCCCTCCAACGGCTTCATCGGCCACCACTTCTTCGGCCTCAGCAAAGTCCCCTCCGCCACCGGTTTCGACTACAGCCACTTCCTCTACCAGTGGGCCTTTGCCATCGCCGCCGCCGGAATCACGAGCGGATCCATTGCCGAGAGGACTCAGTTCGTCGCCTACCTCATCTACTCATCCTTCCTAACCGGCTTCGTCTACCCGGTCGTCTCGCACTGGTTCTGGTCAGTCGACGGCTGGGCTAGCGCCGGAAATACCGAAAACCTCTTATTCGGAACCGGAGTCATCGATTTTGCCGGGTCGGGTGTGGTCCATATGGTCGGAGGCATCGCCGGTCTCTGGGGAGCTTTCATCGAAGGCCCCCGAATGGGTCGGTTCGACCACTCCGGCCGCGCCGTCGCTCTCCGCGGACATAGCGCTTCTCTCGTTGTTCTCGGCACATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

333

Amino Acids

35.57

Weight (kDa)

9.02

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	128 - 331	1.5e-60	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccBSI	CCGCTC	1 cut(s)	681
AccI	GTMKAC	3 cut(s)	372, 750, 783
AccII	CGCG	4 cut(s)	456, 539, 945, 960
AclWI	GGATC	2 cut(s)	678, 691
AcoI	YGGCCR	4 cut(s)	261, 273, 574, 940
AcyI	GRCGYC	3 cut(s)	30, 154, 336
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	970
AfiI	CCNNNNNNNGG	4 cut(s)	563, 891, 919, 920
AgeI	ACCGGT	1 cut(s)	614
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	5 cut(s)	271, 308, 349, 421, 899
AluI	AGCT	5 cut(s)	271, 308, 349, 421, 899
Alw26I	GTCTC	4 cut(s)	86, 343, 766, 893
AlwI	GGATC	2 cut(s)	678, 691
Ama87I	CYCGRG	1 cut(s)	422
Aor51HI	AGCGCT	1 cut(s)	970
ApaI	GGGCCC	1 cut(s)	291
ApeKI	GCWGC	3 cut(s)	305, 418, 500
AsiGI	ACCGGT	1 cut(s)	614
AspLEI	GCGC	5 cut(s)	305, 458, 800, 947, 971
AspS9I	GGNCC	6 cut(s)	287, 288, 554, 648, 862, 911
AsuC2I	CCSGG	2 cut(s)	755, 850
AsuHPI	GGTGA	3 cut(s)	25, 186, 475
AsuNHI	GCTAGC	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	862
BaeGI	GKGCMC	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	2 cut(s)	12, 676
BbsI	GAAGAC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	317, 430, 487
BccI	CCATC	1 cut(s)	665
BceAI	ACGGC	4 cut(s)	353, 580, 802, 932
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	755, 850
BcoDI	GTCTC	4 cut(s)	86, 343, 766, 893
BfaI	CTAG	2 cut(s)	251, 795
BfmI	CTRYAG	2 cut(s)	169, 625
BfoI	RGCGCY	2 cut(s)	801, 972
BisI	GCNGC	9 cut(s)	306, 419, 501, 504, 511, 553, 663, 666, 943
BlsI	GCNGC	9 cut(s)	307, 420, 502, 505, 512, 554, 664, 667, 944
Bme1390I	CCNGG	3 cut(s)	284, 755, 850
Bme18I	GGWCC	1 cut(s)	862
BmeT110I	CYCGRG	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	6 cut(s)	287, 288, 554, 648, 862, 911
BmiI	GGNNCC	7 cut(s)	288, 289, 448, 556, 685, 829, 913
BmrFI	CCNGG	3 cut(s)	284, 755, 850
BmsI	GCATC	1 cut(s)	888
BmtI	GCTAGC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	755, 850
Bsa29I	ATCGAT	1 cut(s)	840
BsaHI	GRCGYC	3 cut(s)	30, 154, 336
BsaI	GGTCTC	1 cut(s)	893
BsaJI	CCNNGG	2 cut(s)	283, 958
BsaWI	WCCGGW	2 cut(s)	614, 830
Bsc4I	CCNNNNNNNGG	4 cut(s)	563, 891, 919, 920
Bse118I	RCCGGY	6 cut(s)	299, 332, 506, 614, 740, 884
Bse1I	ACTGG	2 cut(s)	643, 773
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	283, 958
BseGI	GGATG	2 cut(s)	728, 992
BseLI	CCNNNNNNNGG	4 cut(s)	563, 891, 919, 920
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	607, 716
BseNI	ACTGG	2 cut(s)	643, 773
BseRI	GAGGAG	2 cut(s)	78, 377
BseSI	GKGCMC	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	940
BseXI	GCAGC	3 cut(s)	317, 430, 487
BseYI	CCCAGC	2 cut(s)	267, 789
Bsh1236I	CGCG	4 cut(s)	456, 539, 945, 960
Bsh1285I	CGRYCG	2 cut(s)	759, 943
BshTI	ACCGGT	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	840
BsiEI	CGRYCG	2 cut(s)	759, 943
BsiHKCI	CYCGRG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	4 cut(s)	563, 891, 919, 920
BsmAI	GTCTC	4 cut(s)	86, 343, 766, 893
BsmBI	CGTCTC	2 cut(s)	343, 766
BsmFI	GGGAC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	893
BsoBI	CYCGRG	1 cut(s)	422
Bsp120I	GGGCCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	683
BspCNI	CTCAG	2 cut(s)	606, 715
BspDI	ATCGAT	1 cut(s)	840
BspFNI	CGCG	4 cut(s)	456, 539, 945, 960
BspLI	GGNNCC	7 cut(s)	288, 289, 448, 556, 685, 829, 913
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	2 cut(s)	678, 691
BspTNI	GGTCTC	1 cut(s)	893
BsrBI	CCGCTC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	6 cut(s)	299, 332, 506, 614, 740, 884
BsrI	ACTGG	2 cut(s)	643, 773
BssAI	RCCGGY	6 cut(s)	299, 332, 506, 614, 740, 884
BssECI	CCNNGG	2 cut(s)	283, 958
BssMI	GATC	1 cut(s)	683
BssNI	GRCGYC	3 cut(s)	30, 154, 336
BssSI	CACGAG	2 cut(s)	12, 676
Bst2BI	CACGAG	2 cut(s)	12, 676
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	80, 137
Bst6I	CTCTTC	3 cut(s)	395, 521, 533
BstACI	GRCGYC	3 cut(s)	30, 154, 336
BstC8I	GCNNGC	5 cut(s)	273, 334, 445, 508, 796
BstDEI	CTNAG	3 cut(s)	25, 593, 702
BstDSI	CCRYGG	1 cut(s)	958
BstF5I	GGATG	2 cut(s)	728, 992
BstFNI	CGCG	4 cut(s)	456, 539, 945, 960
BstH2I	RGCGCY	2 cut(s)	801, 972
BstHHI	GCGC	5 cut(s)	305, 458, 800, 947, 971
BstKTI	GATC	1 cut(s)	686
BstMAI	GTCTC	4 cut(s)	86, 343, 766, 893
BstMBI	GATC	1 cut(s)	683
BstMCI	CGRYCG	2 cut(s)	759, 943
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 242, 453, 573, 662, 795, 966
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	282, 753, 848
BstSFI	CTRYAG	2 cut(s)	169, 625
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	4 cut(s)	456, 539, 945, 960
BstV1I	GCAGC	3 cut(s)	317, 430, 487
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	683
BstZI	CGGCCG	1 cut(s)	940
Bsu15I	ATCGAT	1 cut(s)	840
BsuTUI	ATCGAT	1 cut(s)	840
BtgI	CCRYGG	1 cut(s)	958
BtgZI	GCGATG	2 cut(s)	643, 865
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	728, 992
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	3 cut(s)	40, 650, 766
Cac8I	GCNNGC	5 cut(s)	273, 334, 445, 508, 796
CfoI	GCGC	5 cut(s)	305, 458, 800, 947, 971
Cfr10I	RCCGGY	6 cut(s)	299, 332, 506, 614, 740, 884
Cfr13I	GGNCC	6 cut(s)	287, 288, 554, 648, 862, 911
Cfr42I	CCGCGG	1 cut(s)	961
ClaI	ATCGAT	1 cut(s)	840
CseI	GACGC	3 cut(s)	162, 325, 506
Csp6I	GTAC	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	614
CviAII	CATG	3 cut(s)	433, 469, 478
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	25, 593, 702
DpnI	GATC	1 cut(s)	685
DpnII	GATC	1 cut(s)	683
EaeI	YGGCCR	4 cut(s)	261, 273, 574, 940
EagI	CGGCCG	1 cut(s)	940
Eam1104I	CTCTTC	3 cut(s)	395, 521, 533
EarI	CTCTTC	3 cut(s)	395, 521, 533
EciI	GGCGGA	2 cut(s)	87, 598
EclXI	CGGCCG	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	862
Eco47III	AGCGCT	1 cut(s)	970
Eco52I	CGGCCG	1 cut(s)	940
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	2 cut(s)	287, 911
EcoRII	CCWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	291
Esp3I	CGTCTC	2 cut(s)	343, 766
FaeI	CATG	3 cut(s)	436, 472, 481
FaiI	YATR	7 cut(s)	133, 434, 470, 479, 867, 869, 966
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	3 cut(s)	432, 468, 477
FauI	CCCGC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	867
FblI	GTMKAC	3 cut(s)	372, 750, 783
Fnu4HI	GCNGC	9 cut(s)	306, 419, 501, 504, 511, 553, 663, 666, 943
FokI	GGATG	2 cut(s)	715, 979
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	9 cut(s)	306, 419, 501, 504, 511, 553, 663, 666, 943
FspBI	CTAG	2 cut(s)	251, 795
GlaI	GCGC	5 cut(s)	304, 457, 799, 946, 970
GluI	GCNGC	9 cut(s)	306, 419, 501, 504, 511, 553, 663, 666, 943
GsaI	CCCAGC	2 cut(s)	271, 793
HaeII	RGCGCY	2 cut(s)	801, 972
HgaI	GACGC	3 cut(s)	162, 325, 506
HhaI	GCGC	5 cut(s)	305, 458, 800, 947, 971
Hin1I	GRCGYC	3 cut(s)	30, 154, 336
Hin1II	CATG	3 cut(s)	436, 472, 481
Hin6I	GCGC	5 cut(s)	303, 456, 798, 945, 969
HinP1I	GCGC	5 cut(s)	303, 456, 798, 945, 969
HincII	GTYRAC	2 cut(s)	373, 784
HindII	GTYRAC	2 cut(s)	373, 784
HinfI	GANTC	4 cut(s)	21, 672, 700, 834
HphI	GGTGA	3 cut(s)	25, 186, 475
Hpy166II	GTNNAC	3 cut(s)	373, 751, 784
Hpy188I	TCNGA	4 cut(s)	152, 355, 827, 875
Hpy188III	TCNNGA	2 cut(s)	676, 996
Hpy8I	GTNNAC	3 cut(s)	373, 751, 784
Hpy99I	CGWCG	7 cut(s)	156, 241, 374, 500, 713, 788, 953
HpyAV	CCTTC	5 cut(s)	217, 221, 556, 742, 902
HpyCH4III	ACNGT	2 cut(s)	80, 137
HpyCH4IV	ACGT	3 cut(s)	30, 239, 489
HpyCH4V	TGCA	2 cut(s)	59, 418
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 242, 453, 573, 662, 795, 966
HpyF3I	CTNAG	3 cut(s)	25, 593, 702
HpySE526I	ACGT	3 cut(s)	30, 239, 489
Hsp92I	GRCGYC	3 cut(s)	30, 154, 336
Hsp92II	CATG	3 cut(s)	436, 472, 481
HspAI	GCGC	5 cut(s)	303, 456, 798, 945, 969
KroI	GCCGGC	2 cut(s)	332, 506
KroNI	GCCGGC	2 cut(s)	334, 508
KspI	CCGCGG	1 cut(s)	961
Kzo9I	GATC	1 cut(s)	683
LmnI	GCTCC	5 cut(s)	50, 175, 232, 452, 896
Lsp1109I	GCAGC	3 cut(s)	317, 430, 487
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	2 cut(s)	251, 795
MaeII	ACGT	3 cut(s)	30, 239, 489
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	685
MbiI	CCGCTC	1 cut(s)	681
MboI	GATC	1 cut(s)	683
MboII	GAAGA	5 cut(s)	382, 400, 508, 520, 577
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	30, 694, 843
MmeI	TCCRAC	5 cut(s)	175, 212, 378, 585, 853
MreI	CGCCGGCG	2 cut(s)	332, 506
MroNI	GCCGGC	2 cut(s)	332, 506
MspA1I	CMGCKG	2 cut(s)	271, 960
MspR9I	CCNGG	3 cut(s)	284, 755, 850
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	4 cut(s)	456, 539, 945, 960
MwoI	GCNNNNNNNGC	7 cut(s)	233, 242, 453, 573, 662, 795, 966
NaeI	GCCGGC	2 cut(s)	334, 508
NciI	CCSGG	2 cut(s)	755, 850
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	1 cut(s)	683
NgoMIV	GCCGGC	2 cut(s)	332, 506
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	3 cut(s)	436, 472, 481
NlaIV	GGNNCC	7 cut(s)	288, 289, 448, 556, 685, 829, 913
NmeAIII	GCCGAG	3 cut(s)	239, 718, 966
NmuCI	GTSAC	1 cut(s)	31
PdiI	GCCGGC	2 cut(s)	334, 508
PfeI	GAWTC	1 cut(s)	672
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	9 cut(s)	307, 420, 502, 505, 512, 554, 664, 667, 944
PleI	GAGTC	3 cut(s)	29, 694, 842
PpsI	GAGTC	3 cut(s)	29, 694, 842
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	2 cut(s)	267, 789
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	7 cut(s)	288, 289, 448, 556, 685, 829, 913
PspOMI	GGGCCC	1 cut(s)	287
PspPI	GGNCC	6 cut(s)	287, 288, 554, 648, 862, 911
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacII	CCGCGG	1 cut(s)	961
SalI	GTCGAC	2 cut(s)	371, 782
SatI	GCNGC	9 cut(s)	306, 419, 501, 504, 511, 553, 663, 666, 943
Sau3AI	GATC	1 cut(s)	683
Sau96I	GGNCC	6 cut(s)	287, 288, 554, 648, 862, 911
SchI	GAGTC	3 cut(s)	30, 694, 843
ScrFI	CCNGG	3 cut(s)	284, 755, 850
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	2 cut(s)	169, 625
Sfr303I	CCGCGG	1 cut(s)	961
SgrAI	CRCCGGYG	3 cut(s)	299, 332, 506
SgrBI	CCGCGG	1 cut(s)	961
SinI	GGWCC	1 cut(s)	862
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	2 cut(s)	251, 795
StyD4I	CCNGG	3 cut(s)	282, 753, 848
TaaI	ACNGT	2 cut(s)	80, 137
TaiI	ACGT	3 cut(s)	33, 242, 492
TaqI	TCGA	7 cut(s)	372, 495, 621, 783, 840, 906, 930
TauI	GCSGC	6 cut(s)	506, 513, 555, 665, 668, 945
TfiI	GAWTC	1 cut(s)	672
TscAI	CASTG	3 cut(s)	47, 650, 773
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	305, 418, 500
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	304, 485, 559, 892
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	3 cut(s)	47, 650, 773
VpaK11BI	GGWCC	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmiI	GTMKAC	3 cut(s)	372, 750, 783
XspI	CTAG	2 cut(s)	251, 795
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.