Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16971662 .. 16973008

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATATAGCAATATACATAATACTAATTACATCGTCTGTATATATTCTTTCCGTAGGCCTTCGACAAATTTTTTTTTTTTTTTTTTTGTTGAGTGATCCTCTCATACCATTTGCCCGTGGGTCAGCGTCTCCTCTATTCTCTCCGCCCACACACCTACTCTCTCTCTCTCTCTCTCTCTCTGATTTTTCAGTTATGCATGCCTTGCACTTCACCACCACTACTTCACCACCCTCTCCCGCCCTTCTCCAAAATGCCACCCAAACTTACACAGCCACAACACAAATCACATGCAAAATCCTCATCAACCCATCCAAAAAAACCCTAACCCATAAAACCCAAAAACCACCAAGGCAACCCTTGCCACCCCCAAACACTAAACCATTACCGCAAGTGAACCCAGCAAAACCAAATATTAGCCTACCTCACCTAAACCCTTTCCAAAAATTAGCAGCCTCACTCCTAGACGCAGTAGAAACATCACTAATAGTGCCGCAAGAAAACAAGCATGCTTTGCCCAAAAACATCGACCCGGCTGTCCAAATATCCGGGAATTTTGCACCGGTTCAAGAGTGTCCGGTTCATCACGGTCTCGAGGTTGTGGGACAAATCCCTGATTGCTTACGTGGTGTTTATGTCCGAAACGGCGCGAACCCTATGTTTCCGCCGTCGGGCGGACACCACTTGTTTGATGGGGACGGTATGATTCACGCCCTCACTCTCGGCTCGTCAAATCGAGCCAGCTACAGCTGTAGGTACACACGCACGAGCCGACTTGAGCAAGAAGCCATGCTGGGCAGGTCCATTTTTCCCAAGCCGATTGGGGAGCTTCATGGTCACTCGGGTTTGGCTCGGCTTGGCATGTTCATGGCTCGAGCAGCTATCGGCTTGGTAGACAGCTCACGTGGCACCGGCGTCGCTAATGCCGGCTTGGTTTATTTCAACGGACGATTATTAGCCATGTCGGAAGATGATCGATCCCGTACGGTGTTAAGATCAAGGGCGACGGTGATCTGGAAACAATCGGAAGGTTCGATTTTAACGGTGGATTGGACCGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

355

Amino Acids

38.51

Weight (kDa)

9.43

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	186 - 326	3.4e-31	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	1 cut(s)	650
AciI	CCGC	6 cut(s)	146, 240, 389, 494, 665, 675
AclWI	GGATC	2 cut(s)	92, 972
AcsI	RAATTY	2 cut(s)	69, 553
AcvI	CACGTG	1 cut(s)	905
AcyI	GRCGYC	1 cut(s)	915
AfaI	GTAC	2 cut(s)	758, 985
AfiI	CCNNNNNNNGG	2 cut(s)	671, 674
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	2 cut(s)	569, 943
AluBI	AGCT	5 cut(s)	744, 750, 829, 881, 900
AluI	AGCT	5 cut(s)	744, 750, 829, 881, 900
Alw26I	GTCTC	2 cut(s)	135, 596
AlwI	GGATC	2 cut(s)	92, 972
Ama87I	CYCGRG	3 cut(s)	593, 841, 873
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	452, 878
ApoI	RAATTY	2 cut(s)	69, 553
AsiGI	ACCGGT	1 cut(s)	562
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	801, 1053
AsuC2I	CCSGG	2 cut(s)	533, 550
AsuHPI	GGTGA	4 cut(s)	205, 219, 419, 1021
AvaI	CYCGRG	3 cut(s)	593, 841, 873
AvaII	GGWCC	2 cut(s)	801, 1053
BanI	GGYRCC	1 cut(s)	908
BauI	CACGAG	1 cut(s)	766
BbrPI	CACGTG	1 cut(s)	905
BbvI	GCAGC	2 cut(s)	464, 890
BccI	CCATC	2 cut(s)	319, 686
BceAI	ACGGC	2 cut(s)	652, 661
BcgI	CGANNNNNNTGC	2 cut(s)	898, 932
BcnI	CCSGG	2 cut(s)	533, 550
BcoDI	GTCTC	2 cut(s)	135, 596
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	745, 751
BfuAI	ACCTGC	1 cut(s)	789
BisI	GCNGC	3 cut(s)	453, 494, 879
BlsI	GCNGC	3 cut(s)	454, 495, 880
Bme1390I	CCNGG	2 cut(s)	533, 550
Bme18I	GGWCC	2 cut(s)	801, 1053
BmeT110I	CYCGRG	3 cut(s)	593, 841, 873
BmgT120I	GGNCC	2 cut(s)	801, 1053
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	2 cut(s)	533, 550
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	2 cut(s)	533, 550
Bsa29I	ATCGAT	1 cut(s)	976
BsaAI	YACGTR	2 cut(s)	626, 905
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	118, 350
BsaWI	WCCGGW	2 cut(s)	562, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	671, 674
Bse118I	RCCGGY	3 cut(s)	562, 911, 926
BseCI	ATCGAT	1 cut(s)	976
BseDI	CCNNGG	2 cut(s)	118, 350
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	671, 674
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	464, 890
BseYI	CCCAGC	2 cut(s)	400, 793
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	908
BshTI	ACCGGT	1 cut(s)	562
BshVI	ATCGAT	1 cut(s)	976
BsiHKCI	CYCGRG	3 cut(s)	593, 841, 873
BsiSI	CCGG	6 cut(s)	533, 549, 563, 578, 912, 927
BsiWI	CGTACG	1 cut(s)	983
BslFI	GGGAC	2 cut(s)	618, 710
BslI	CCNNNNNNNGG	2 cut(s)	671, 674
BsmAI	GTCTC	2 cut(s)	135, 596
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	618, 710
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	596
BsoBI	CYCGRG	3 cut(s)	593, 841, 873
Bsp143I	GATC	5 cut(s)	97, 973, 977, 995, 1011
BspACI	CCGC	6 cut(s)	146, 240, 389, 494, 665, 675
BspANI	GGCC	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	976
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	92, 972
BspT107I	GGYRCC	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	596
BsrFI	RCCGGY	3 cut(s)	562, 911, 926
BssAI	RCCGGY	3 cut(s)	562, 911, 926
BssECI	CCNNGG	2 cut(s)	118, 350
BssMI	GATC	5 cut(s)	97, 973, 977, 995, 1011
BssNI	GRCGYC	1 cut(s)	915
BssSI	CACGAG	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	766
Bst4CI	ACNGT	5 cut(s)	590, 701, 988, 1009, 1045
BstACI	GRCGYC	1 cut(s)	915
BstAPI	GCANNNNNTGC	3 cut(s)	205, 361, 514
BstBAI	YACGTR	2 cut(s)	626, 905
BstC8I	GCNNGC	4 cut(s)	201, 510, 742, 928
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	5 cut(s)	100, 976, 980, 998, 1014
BstMAI	GTCTC	2 cut(s)	135, 596
BstMBI	GATC	5 cut(s)	97, 973, 977, 995, 1011
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 361, 514, 878, 906
BstNSI	RCATGY	4 cut(s)	203, 294, 512, 865
BstSCI	CCNGG	2 cut(s)	531, 548
BstSFI	CTRYAG	2 cut(s)	745, 751
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	464, 890
Bsu15I	ATCGAT	1 cut(s)	976
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	976
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	789
Cac8I	GCNNGC	4 cut(s)	201, 510, 742, 928
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	3 cut(s)	562, 911, 926
Cfr13I	GGNCC	2 cut(s)	801, 1053
ClaI	ATCGAT	1 cut(s)	976
CseI	GACGC	3 cut(s)	117, 476, 904
Csp6I	GTAC	2 cut(s)	757, 984
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	9 cut(s)	200, 291, 509, 790, 833, 862, 868, 961, 1062
CviQI	GTAC	2 cut(s)	757, 984
DpnI	GATC	5 cut(s)	99, 975, 979, 997, 1013
DpnII	GATC	5 cut(s)	97, 973, 977, 995, 1011
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EciI	GGCGGA	3 cut(s)	135, 654, 690
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	801, 1053
Eco72I	CACGTG	1 cut(s)	905
Eco88I	CYCGRG	3 cut(s)	593, 841, 873
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	9 cut(s)	203, 294, 512, 793, 836, 865, 871, 964, 1065
FaqI	GGGAC	2 cut(s)	618, 710
FatI	CATG	9 cut(s)	199, 290, 508, 789, 832, 861, 867, 960, 1061
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	3 cut(s)	453, 494, 879
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	453, 494, 879
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	3 cut(s)	453, 494, 879
GsaI	CCCAGC	2 cut(s)	404, 797
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	6 cut(s)	533, 549, 563, 578, 912, 927
HgaI	GACGC	3 cut(s)	117, 476, 904
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	9 cut(s)	203, 294, 512, 793, 836, 865, 871, 964, 1065
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	1 cut(s)	706
HpaII	CCGG	6 cut(s)	533, 549, 563, 578, 912, 927
HphI	GGTGA	4 cut(s)	205, 219, 419, 1021
Hpy166II	GTNNAC	3 cut(s)	397, 759, 895
Hpy188I	TCNGA	4 cut(s)	184, 641, 967, 1027
Hpy188III	TCNNGA	3 cut(s)	569, 593, 1015
Hpy8I	GTNNAC	3 cut(s)	397, 759, 895
Hpy99I	CGWCG	3 cut(s)	673, 920, 1009
HpyAV	CCTTC	3 cut(s)	71, 254, 1022
HpyCH4III	ACNGT	5 cut(s)	590, 701, 988, 1009, 1045
HpyCH4IV	ACGT	2 cut(s)	625, 904
HpyCH4V	TGCA	4 cut(s)	199, 208, 294, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 361, 514, 878, 906
HpySE526I	ACGT	2 cut(s)	625, 904
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	9 cut(s)	203, 294, 512, 793, 836, 865, 871, 964, 1065
HspAI	GCGC	1 cut(s)	648
KroI	GCCGGC	1 cut(s)	926
KroNI	GCCGGC	1 cut(s)	928
Kzo9I	GATC	5 cut(s)	97, 973, 977, 995, 1011
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	2 cut(s)	464, 890
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	625, 904
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	5 cut(s)	99, 975, 979, 997, 1013
MboI	GATC	5 cut(s)	97, 973, 977, 995, 1011
MboII	GAAGA	1 cut(s)	980
MluCI	AATT	4 cut(s)	27, 69, 446, 553
MmeI	TCCRAC	1 cut(s)	945
MnlI	CCTC	8 cut(s)	111, 144, 244, 311, 435, 466, 589, 725
Mph1103I	ATGCAT	1 cut(s)	201
MroNI	GCCGGC	1 cut(s)	926
MseI	TTAA	2 cut(s)	992, 1040
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	750
MspI	CCGG	6 cut(s)	533, 549, 563, 578, 912, 927
MspR9I	CCNGG	2 cut(s)	533, 550
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	5 cut(s)	205, 361, 514, 878, 906
NaeI	GCCGGC	1 cut(s)	928
NciI	CCSGG	2 cut(s)	533, 550
NdeII	GATC	5 cut(s)	97, 973, 977, 995, 1011
NgoMIV	GCCGGC	1 cut(s)	926
NlaIII	CATG	9 cut(s)	203, 294, 512, 793, 836, 865, 871, 964, 1065
NlaIV	GGNNCC	1 cut(s)	910
NmeAIII	GCCGAG	2 cut(s)	702, 832
NmuCI	GTSAC	1 cut(s)	836
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	4 cut(s)	203, 294, 512, 865
PaeI	GCATGC	2 cut(s)	203, 512
PaeR7I	CTCGAG	2 cut(s)	593, 873
PceI	AGGCCT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	2 cut(s)	769, 1031
PdiI	GCCGGC	1 cut(s)	928
PfeI	GAWTC	1 cut(s)	706
Pfl23II	CGTACG	1 cut(s)	983
PfoI	TCCNGGA	1 cut(s)	548
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	454, 495, 880
PmaCI	CACGTG	1 cut(s)	905
PmlI	CACGTG	1 cut(s)	905
Ppu21I	YACGTR	2 cut(s)	626, 905
PspCI	CACGTG	1 cut(s)	905
PspFI	CCCAGC	2 cut(s)	400, 793
PspLI	CGTACG	1 cut(s)	983
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	801, 1053
PspXI	VCTCGAGB	1 cut(s)	873
PvuII	CAGCTG	1 cut(s)	750
RsaI	GTAC	2 cut(s)	758, 985
RsaNI	GTAC	2 cut(s)	757, 984
RseI	CAYNNNNRTG	1 cut(s)	866
SaqAI	TTAA	2 cut(s)	992, 1040
SatI	GCNGC	3 cut(s)	453, 494, 879
Sau3AI	GATC	5 cut(s)	97, 973, 977, 995, 1011
Sau96I	GGNCC	2 cut(s)	801, 1053
ScrFI	CCNGG	2 cut(s)	533, 550
SfcI	CTRYAG	2 cut(s)	745, 751
Sfr274I	CTCGAG	2 cut(s)	593, 873
SgrAI	CRCCGGYG	1 cut(s)	911
SinI	GGWCC	2 cut(s)	801, 1053
SlaI	CTCGAG	2 cut(s)	593, 873
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	3 cut(s)	593, 776, 873
SmoI	CTYRAG	3 cut(s)	593, 776, 873
SphI	GCATGC	2 cut(s)	203, 512
Sse9I	AATT	4 cut(s)	27, 69, 446, 553
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	6 cut(s)	146, 240, 389, 494, 665, 675
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	531, 548
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	5 cut(s)	590, 701, 988, 1009, 1045
TaiI	ACGT	2 cut(s)	628, 907
TaqI	TCGA	7 cut(s)	64, 528, 594, 736, 874, 976, 1034
TasI	AATT	4 cut(s)	27, 69, 446, 553
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	2 cut(s)	992, 1040
Tru9I	TTAA	2 cut(s)	992, 1040
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	2 cut(s)	452, 878
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	3 cut(s)	572, 821, 856
TspGWI	ACGGA	2 cut(s)	43, 960
VpaK11BI	GGWCC	2 cut(s)	801, 1053
XapI	RAATTY	2 cut(s)	69, 553
XceI	RCATGY	4 cut(s)	203, 294, 512, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XhoI	CTCGAG	2 cut(s)	593, 873
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.