Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17899420 .. 17900492

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTATGGAAAAGATGATGCCCGGACATGCCTTGCTTAATAATATTGAAGCAGACTCATACAATTATAATACACACAGACAGACACATACATGTGCGTGCATATTATACTCCATGATTGTTGTTTGCTACCAGGCTAAGATGTGTGCTGGCTTATACTATAAGACAAAGCAAAGCACACAGTTACTGGAAATTATATTAGGTTTTCGAACTTTGAATCTAAATAATTACTATCAGAGTTCATCGCTGTTTCACGTGGAATATGGATTGAAGAAAGTGAAGTTGATTATCATTCTGTTTCTAATTTGCTGGTATGGGATGTGTGTACAACGTCTGGTCAAAGGAGTTGTTCGCGTTGCGCTCTTAGGTTGGAACCAGAACCAAAGAAAAGCTCATATTTCTTCCGAGTCTTCAACTGGAATTATTAATCATATATCTGTTAACTTCTTGATTGGTTGCTACAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATCACATATCCATAATTGGCTTGATTTGAACCAAATAATCATTTCCTGTCGGCTGATTGACAAAGTTAATATAGAGTCACAGTTGTTGGTAGGGTTCCGGAGTGTGGAATTAGCAGTGCAGAAAAACAAAGATCCTTTCCAACGGATTGGATGGCTTGAGTTTCTTAACACGGAGGAGGAAAGCAGTCTGACTCCTGAGCAGATTATGTATTTGATGGGAATGAAAAACTTGTTGAGATTGTGCATTCAACATACAGACAAGGTGGAAGCTGCATTTCAGCAGCTAAGATCTAGGTTAGTGAGTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032451 GO:0032452 GO:0032453 GO:0034720 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051213 GO:0051252 GO:0051253 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_4

Protein Analysis

270

Amino Acids

31.4

Weight (kDa)

8.8

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	594
AclWI	GGATC	1 cut(s)	623
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	601
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	6 cut(s)	50, 217, 271, 414, 526, 746
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	392, 767, 781
AluI	AGCT	3 cut(s)	392, 767, 781
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	767, 778
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	24
AsuII	TTCGAA	1 cut(s)	208
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	754, 790
BccI	CCATC	2 cut(s)	642, 706
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	789
BglII	AGATCT	1 cut(s)	785
BisI	GCNGC	2 cut(s)	768, 779
BlsI	GCNGC	2 cut(s)	769, 780
Bme1390I	CCNGG	2 cut(s)	24, 134
BmiI	GGNNCC	2 cut(s)	374, 593
BmrFI	CCNGG	2 cut(s)	24, 134
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse1I	ACTGG	2 cut(s)	192, 421
BseAI	TCCGGA	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	324, 653
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	192, 421
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	754, 790
BsgI	GTGCAG	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	24, 595
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	628, 785
BspCNI	CTCAG	1 cut(s)	685
BspEI	TCCGGA	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	374, 593
BspPI	GGATC	1 cut(s)	623
BspT104I	TTCGAA	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	192, 421
BssMI	GATC	2 cut(s)	628, 785
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	183, 579
BstAUI	TGTACA	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	100, 151
BstDEI	CTNAG	4 cut(s)	138, 364, 693, 782
BstF5I	GGATG	2 cut(s)	324, 653
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	2 cut(s)	631, 788
BstMBI	GATC	2 cut(s)	628, 785
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	32, 96
BstSCI	CCNGG	2 cut(s)	22, 132
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	754, 790
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	628, 785
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	2 cut(s)	628, 785
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	324, 653
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	100, 151
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	3 cut(s)	29, 93, 115
CviJI	RGCY	8 cut(s)	137, 153, 392, 517, 550, 652, 767, 781
CviKI_1	RGCY	8 cut(s)	137, 153, 392, 517, 550, 652, 767, 781
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	4 cut(s)	138, 364, 693, 782
DpnI	GATC	2 cut(s)	630, 787
DpnII	GATC	2 cut(s)	628, 785
Eco72I	CACGTG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	32, 96, 118
FatI	CATG	3 cut(s)	28, 92, 114
Fnu4HI	GCNGC	2 cut(s)	768, 779
FokI	GGATG	2 cut(s)	331, 660
Fsp4HI	GCNGC	2 cut(s)	768, 779
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	2 cut(s)	768, 779
HapII	CCGG	2 cut(s)	24, 595
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	32, 96, 118
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	5 cut(s)	56, 217, 407, 572, 688
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	24, 595
Hpy166II	GTNNAC	2 cut(s)	326, 442
Hpy188I	TCNGA	3 cut(s)	237, 406, 687
Hpy188III	TCNNGA	3 cut(s)	448, 595, 692
Hpy8I	GTNNAC	2 cut(s)	326, 442
HpyCH4III	ACNGT	2 cut(s)	183, 579
HpyCH4IV	ACGT	2 cut(s)	255, 331
HpyCH4V	TGCA	5 cut(s)	102, 496, 616, 741, 770
HpyF3I	CTNAG	4 cut(s)	138, 364, 693, 782
HpySE526I	ACGT	2 cut(s)	255, 331
Hsp92II	CATG	3 cut(s)	32, 96, 118
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	594
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	628, 785
Lsp1109I	GCAGC	2 cut(s)	754, 790
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	255, 331
MaeIII	GTNAC	2 cut(s)	183, 573
MalI	GATC	2 cut(s)	630, 787
MboI	GATC	2 cut(s)	628, 785
MboII	GAAGA	3 cut(s)	283, 393, 402
MflI	RGATCY	2 cut(s)	628, 785
MluCI	AATT	8 cut(s)	64, 192, 226, 303, 420, 463, 511, 605
MlyI	GAGTC	4 cut(s)	50, 416, 581, 682
MmeI	TCCRAC	2 cut(s)	350, 661
MnlI	CCTC	2 cut(s)	664, 667
MroI	TCCGGA	1 cut(s)	594
MseI	TTAA	5 cut(s)	39, 426, 441, 564, 663
MslI	CAYNNNNRTG	3 cut(s)	91, 93, 97
MspI	CCGG	2 cut(s)	24, 595
MspR9I	CCNGG	2 cut(s)	24, 134
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	354
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	628, 785
NlaIII	CATG	3 cut(s)	32, 96, 118
NlaIV	GGNNCC	2 cut(s)	374, 593
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	2 cut(s)	32, 96
NspV	TTCGAA	1 cut(s)	208
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	769, 780
PleI	GAGTC	4 cut(s)	50, 415, 580, 682
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	4 cut(s)	50, 415, 580, 682
Ppu21I	YACGTR	1 cut(s)	256
PscI	ACATGT	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	374, 593
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	628, 785
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	3 cut(s)	91, 93, 97
SaqAI	TTAA	5 cut(s)	39, 426, 441, 564, 663
SatI	GCNGC	2 cut(s)	768, 779
Sau3AI	GATC	2 cut(s)	628, 785
SchI	GAGTC	4 cut(s)	50, 416, 581, 682
ScrFI	CCNGG	2 cut(s)	24, 134
SetI	ASST	9 cut(s)	205, 258, 334, 370, 394, 762, 769, 783, 794
SfaNI	GCATC	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	91, 93, 97
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	8 cut(s)	64, 192, 226, 303, 420, 463, 511, 605
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	22, 132
TaaI	ACNGT	2 cut(s)	183, 579
TaiI	ACGT	2 cut(s)	258, 334
TaqI	TCGA	1 cut(s)	208
TasI	AATT	8 cut(s)	64, 192, 226, 303, 420, 463, 511, 605
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	5 cut(s)	39, 426, 441, 564, 663
Tru9I	TTAA	5 cut(s)	39, 426, 441, 564, 663
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	2 cut(s)	767, 778
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	231, 734
TspGWI	ACGGA	2 cut(s)	655, 683
TspRI	CASTG	1 cut(s)	618
VspI	ATTAAT	1 cut(s)	426
XceI	RCATGY	2 cut(s)	32, 96
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.