pycom16g20950

Chloride channel protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
19068950 .. 19070236
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGGGAATGCCTATTTCGGTTTTTGATGGTTTCAAGGCAGCATCGTGTACTTTTGTCAAGGCAATTGCTGCTTGTGTCACACTTGGGACTGGGAACTCGTTAGGTCCCGAGGTCCTAGCGTTGAGATTGGAACTTCTATTGGTGTTGTGTTTGATAAAAGTTCACAACGAAGGGTCTCTCATGTGGTTGCTGGAATTTCTTCTGCTTCCGCTATATTTATTGCTGGGTGTCCTATGTGGTTTGGTTTCATTAACCTTATCAAAGTGCACATCATACATGTTGGTATTTGTTGACAATCTTCACAAGACTGCTGGCCTACCAAAATTTTCGTTCCCTATCAGTGTTGACATTTTGCTGGAATCTCGACCACTTGAGAAGGGCCTCTCAGCTGATCTGTTGCTTCAGTTGGTAGTAGTCAAGATAGGTGCAACCCCATTCTGTCGAGCTTCTGGATTAGATGGAGCCCACTATGCTCCATCACTTTTTATTGGTGCAGCAACAGGAATGTCATACGGCAAAAACATCAGTTCTGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS Voltage_CLC

Protein Analysis

180

Amino Acids

18.96

Weight (kDa)

7.6

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Voltage_CLC PF00654 64 - 175 2.4e-08 Voltage gated chloride channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AcsI RAATTY 2 cut(s) 194, 323
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 2 cut(s) 389, 446
AluI AGCT 2 cut(s) 389, 446
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 2 cut(s) 313, 379
ApaLI GTGCAC 1 cut(s) 265
ApeKI GCWGC 3 cut(s) 38, 68, 494
ApoI RAATTY 2 cut(s) 194, 323
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 104, 112, 379
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 2 cut(s) 104, 112
BaeGI GKGCMC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 50, 55, 506
BccI CCATC 3 cut(s) 20, 452, 484
BceAI ACGGC 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 3 cut(s) 39, 69, 495
BlsI GCNGC 3 cut(s) 40, 70, 496
Bme18I GGWCC 2 cut(s) 104, 112
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 104, 112, 379
BmiI GGNNCC 2 cut(s) 106, 463
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 3 cut(s) 50, 55, 506
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 2 cut(s) 315, 381
BsiHKAI GWGCWC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 90, 100
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 90, 100
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 2 cut(s) 315, 381
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 269, 466
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 209
BspANI GGCC 2 cut(s) 315, 381
BspCNI CTCAG 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 106, 463
BspMAI CTGCAG 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 385
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 68, 470
BstNSI RCATGY 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 50, 55, 506
BsuRI GGCC 2 cut(s) 315, 381
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 104, 112, 379
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 181, 277
CviJI RGCY 5 cut(s) 315, 381, 389, 446, 464
CviKI_1 RGCY 5 cut(s) 315, 381, 389, 446, 464
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 385
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 104, 112
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 107
EcoO109I RGGNCCY 3 cut(s) 104, 112, 379
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 2 cut(s) 184, 280
FaiI YATR 7 cut(s) 182, 214, 235, 274, 278, 471, 511
FaqI GGGAC 2 cut(s) 90, 100
FatI CATG 2 cut(s) 180, 276
Fnu4HI GCNGC 3 cut(s) 39, 69, 495
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 39, 69, 495
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 39, 69, 495
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 315, 381
Hin1II CATG 2 cut(s) 184, 280
HincII GTYRAC 2 cut(s) 292, 346
HindII GTYRAC 2 cut(s) 292, 346
HinfI GANTC 1 cut(s) 359
Hpy166II GTNNAC 5 cut(s) 48, 163, 267, 292, 346
Hpy188III TCNNGA 4 cut(s) 107, 363, 418, 450
Hpy8I GTNNAC 5 cut(s) 48, 163, 267, 292, 346
HpyAV CCTTC 2 cut(s) 164, 370
HpyCH4V TGCA 4 cut(s) 267, 428, 494, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 470
HpyF3I CTNAG 1 cut(s) 385
Hsp92II CATG 2 cut(s) 184, 280
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 461, 478
LpnPI CCDG 7 cut(s) 75, 176, 209, 297, 341, 435, 486
Lsp1109I GCAGC 3 cut(s) 50, 55, 506
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 2 cut(s) 191, 290
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 269, 466
MluCI AATT 3 cut(s) 63, 194, 323
MnlI CCTC 2 cut(s) 103, 392
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 389
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 68, 470
NdeII GATC 1 cut(s) 391
NlaIII CATG 2 cut(s) 184, 280
NlaIV GGNNCC 2 cut(s) 106, 463
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 40, 70, 496
PpuMI RGGWCCY 2 cut(s) 104, 112
PscI ACATGT 1 cut(s) 276
Psp5II RGGWCCY 2 cut(s) 104, 112
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 106, 463
PspPI GGNCC 3 cut(s) 104, 112, 379
PspPPI RGGWCCY 2 cut(s) 104, 112
PstI CTGCAG 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 3 cut(s) 39, 69, 495
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 3 cut(s) 104, 112, 379
SduI GDGCHC 2 cut(s) 269, 466
SetI ASST 6 cut(s) 106, 114, 257, 391, 427, 448
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 104, 112
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 63, 194, 323
SsiI CCGC 1 cut(s) 209
SspMI CTAG 1 cut(s) 116
TaqI TCGA 2 cut(s) 364, 442
TasI AATT 3 cut(s) 63, 194, 323
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 3 cut(s) 38, 68, 494
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 346
VneI GTGCAC 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 104, 112
XapI RAATTY 2 cut(s) 194, 323
XceI RCATGY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.