pycom16g21360

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
19753765 .. 19754130
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGATGGTGCTCTACCTGCTCTATGAATCAGCTTCAGTCTACTCTCTATTCCTGGCTCAGAGATGCAACACCGGAATCGAGCTACCAGAGAAGGTGTTCAAGACTGACAGTATCAAAGGGGAGATGAAGAACATCGTGTTGAAGTTGGTTGTTCTGAAGGTGAAGGAAGAGGAGAAGGCCAACGTCTTCCATGTGAAGGCCAAGCAGTGGTGCCGTACTGGCCTCACCGGCTTCATCTTGAAACCCAGAGGAAAAACCCCAAAACTAAACAGAAAACCCTTGATAGAAAAAATCCAGAGACCTAAAAAAAAGAACTATGAATACGGAAGCATAAATGATCAAATATGCGGAAACGAAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

122

Amino Acids

14.03

Weight (kDa)

9.81

Isoelectric Point (pI)

17.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 207
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 348
AcuI CTGAAG 2 cut(s) 18, 176
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 196, 207
AgsI TTSAA 3 cut(s) 100, 142, 241
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 32, 82
AluI AGCT 2 cut(s) 32, 82
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 3 cut(s) 177, 198, 220
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 172, 217
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 24
BglI GCCNNNNNGGC 2 cut(s) 219, 228
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 207
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 196, 207
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 185
BshFI GGCC 3 cut(s) 179, 200, 222
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 72, 228
BslI CCNNNNNNNGG 2 cut(s) 196, 207
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 3 cut(s) 179, 200, 222
Bso31I GGTCTC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 348
BspANI GGCC 3 cut(s) 179, 200, 222
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 3 cut(s) 16, 219, 228
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 179, 200, 222
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 227
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 32, 56, 82, 179, 200, 222, 231
CviKI_1 RGCY 7 cut(s) 32, 56, 82, 179, 200, 222, 231
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 18, 176
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 194
FaiI YATR 5 cut(s) 24, 192, 318, 332, 346
FatI CATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 39
HaeIII GGCC 3 cut(s) 179, 200, 222
HapII CCGG 2 cut(s) 72, 228
Hin1II CATG 1 cut(s) 194
HinfI GANTC 2 cut(s) 26, 75
HpaII CCGG 2 cut(s) 72, 228
HphI GGTGA 2 cut(s) 172, 217
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 60, 156
Hpy188III TCNNGA 3 cut(s) 100, 238, 295
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 5 cut(s) 85, 151, 157, 169, 190
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 219, 228
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 9 cut(s) 29, 38, 65, 85, 99, 204, 241, 259, 308
LweI GCATC 1 cut(s) 53
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 139, 178, 179
MhlI GDGCHC 1 cut(s) 12
MnlI CCTC 3 cut(s) 163, 233, 242
MroXI GAANNNNTTC 1 cut(s) 95
MspI CCGG 2 cut(s) 72, 228
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 16, 219, 228
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 26, 75
PflMI CCANNNNNTGG 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 212
PsrI GAACNNNNNNTAC 2 cut(s) 305, 337
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 12
SetI ASST 7 cut(s) 18, 34, 84, 96, 162, 186, 304
SfaNI GCATC 1 cut(s) 53
SsiI CCGC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 2 cut(s) 26, 75
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 39, 140, 223, 333
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.