Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19874199 .. 19879280

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAGAGACGTAAACGGAAGCCCATGGAGCCCAAAACTTCTAAAACTCACGAAGGAAGACGCTGCTAGGGTTGAAGTTCTCTCTGTCTCTCTCCCTCCCTCCCCCACCTCCCCTATCTGTCCCTCCCCTTTCAAGGAACAAAAGAGAAAAGCGAACATGTCTCGGCCGGAGCTGCAAGCTCCACCCGAGATTTTCTACAATGAAGAGGAAGCTCGAAAGTACACTCGCAATTCCCGAATCATGGAAATTCAGTCGGAGCTCTCCCACCGAGCCCTCGAGCTTCTCGCTCTCCCCGACGACGGCGTCCCCAGGCTGCTCCTCGATATTGGTTGTGGGTCGGGGCTCAGCGGAGATACGTTGTCGGAGAGTGGGCATCAGTGGATTGGTTTAGATATTTCCCAGTCGATGCTTGGTATGTGGTTTTTTCGGGTTTCGTTTATTCGTTTTCGATGTTTTGTTTTGGTTTTGAGCTTCTTTGATGGATTCCATGGTTTGTTTCTAAATGGGAATTACATTTCTTTGATGATTGGAGATGTGGCATTGGAGAATGAAGTTGAGGGTGACCTTTTGCTCGGGGACATGGGTCAGGGCTTAGGACTTCGTTCAGGAATTATTGATGGAGCGATAAGCATCTCAGCTGTTCAGTGGTTGTGCAATGCTGATAAGTCATCACATAATCCACGATTACGATTGAAGGCTTTCTTTGGATCATTATACAGATGCTTAGCAAGGGGAGCAAGGGCAGCATTTCAAGTTTATCCTGAAAATCTGGACCAGCGCGAGTTGATTTTGAGTTCTGCAATGCGTGCTGGATTTGCGGGGGGCGTCGTTGTTGATTTTCCCAACAGTTCCAAGAAACGAAAGGAGTACCTTGTCCTCACTTGCGGTTCACCATCTATTACTACTTCTACTCCCAAGGGAAAAGGCGAAGATGGCGAGGGTTCCTCTGATGATGAGAGTAGTGAAGATGAAGAAAATCAGACGGTTTCAAACTCAGACAGGCACAGGCCGAGGAAAAAGCAGAAGACAAATAAGAAAGGCAAGGGAAGAGAATGGATACTAAAGAAGAAGGAACAGATGAGAAAAAAAGGAAATGTTGTTCCGCCAGACACAAAATATACAGCTCGGAAAAGAAAAGCTCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009611 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0019827 GO:0022613 GO:0022622 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0036265 GO:0042060 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:0090696 GO:0098727 GO:0099402 GO:0140098 GO:0140102 GO:1901360 GO:1905392 GO:1990110

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 WBS_methylT

Protein Analysis

383

Amino Acids

42.58

Weight (kDa)

9.24

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WBS_methylT	PF12589	293 - 379	4.9e-23	Methyltransferase involved in Williams-Beuren syndrome

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccII	CGCG	1 cut(s)	780
AciI	CCGC	4 cut(s)	348, 818, 885, 1103
AclWI	GGATC	1 cut(s)	715
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	246
AcyI	GRCGYC	2 cut(s)	303, 825
AfaI	GTAC	2 cut(s)	221, 869
AfiI	CCNNNNNNNGG	3 cut(s)	133, 241, 299
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	74, 133, 694, 752, 990
AjnI	CCWGG	1 cut(s)	308
AloI	GAACNNNNNNTCC	2 cut(s)	1083, 1115
AluBI	AGCT	9 cut(s)	172, 179, 212, 259, 280, 471, 638, 1124, 1139
AluI	AGCT	9 cut(s)	172, 179, 212, 259, 280, 471, 638, 1124, 1139
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	91, 165
AlwI	GGATC	1 cut(s)	715
Ama87I	CYCGRG	3 cut(s)	185, 275, 572
AoxI	GGCC	2 cut(s)	164, 1007
ApeKI	GCWGC	4 cut(s)	62, 172, 313, 743
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	2 cut(s)	572, 882
AvaI	CYCGRG	3 cut(s)	185, 275, 572
AvaII	GGWCC	1 cut(s)	772
BanII	GRGCYC	4 cut(s)	32, 261, 274, 345
BbsI	GAAGAC	2 cut(s)	63, 1031
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	49, 159, 300, 755
BccI	CCATC	4 cut(s)	473, 611, 901, 926
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	1050
BcoDI	GTCTC	2 cut(s)	91, 165
BfaI	CTAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	1050
BisI	GCNGC	4 cut(s)	63, 173, 314, 744
BlpI	GCTNAGC	2 cut(s)	344, 724
BlsI	GCNGC	4 cut(s)	64, 174, 315, 745
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	772
BmeT110I	CYCGRG	3 cut(s)	185, 275, 572
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	2 cut(s)	29, 943
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	4 cut(s)	382, 396, 639, 710
BmuI	ACTGGG	1 cut(s)	394
BoxI	GACNNNNGTC	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	63, 1031
BplI	GAGNNNNNCTC	2 cut(s)	929, 961
Bpu10I	CCTNAGC	1 cut(s)	592
Bpu1102I	GCTNAGC	2 cut(s)	344, 724
BsaBI	GATNNNNATC	1 cut(s)	629
BsaHI	GRCGYC	2 cut(s)	303, 825
BsaJI	CCNNGG	5 cut(s)	23, 308, 487, 915, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	895, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 241, 299
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	661, 807
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	5 cut(s)	23, 308, 487, 915, 1010
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	3 cut(s)	133, 241, 299
BseMI	GCAATG	2 cut(s)	661, 807
BseMII	CTCAG	3 cut(s)	358, 648, 1008
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	308
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	49, 159, 300, 755
Bsh1236I	CGCG	1 cut(s)	780
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	166, 1009
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	3 cut(s)	185, 275, 572
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	3 cut(s)	105, 290, 590
BslI	CCNNNNNNNGG	3 cut(s)	133, 241, 299
BsmAI	GTCTC	2 cut(s)	91, 165
BsmFI	GGGAC	3 cut(s)	105, 290, 590
BsnI	GGCC	2 cut(s)	166, 1009
BsoBI	CYCGRG	3 cut(s)	185, 275, 572
Bsp1286I	GDGCHC	4 cut(s)	32, 261, 274, 345
Bsp143I	GATC	1 cut(s)	707
Bsp1720I	GCTNAGC	2 cut(s)	344, 724
Bsp19I	CCATGG	2 cut(s)	23, 487
BspACI	CCGC	4 cut(s)	348, 818, 885, 1103
BspANI	GGCC	2 cut(s)	166, 1009
BspCNI	CTCAG	3 cut(s)	357, 647, 1007
BspFNI	CGCG	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	29, 943
BspPI	GGATC	1 cut(s)	715
BsrDI	GCAATG	2 cut(s)	661, 807
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	5 cut(s)	23, 308, 487, 915, 1010
BssMI	GATC	1 cut(s)	707
BssNI	GRCGYC	2 cut(s)	303, 825
BssT1I	CCWWGG	3 cut(s)	23, 487, 915
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	848, 985
Bst6I	CTCTTC	2 cut(s)	198, 1042
BstACI	GRCGYC	2 cut(s)	303, 825
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	177, 807
BstDEI	CTNAG	5 cut(s)	344, 592, 634, 724, 994
BstDSI	CCRYGG	2 cut(s)	23, 487
BstEII	GGTNACC	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	1 cut(s)	710
BstMAI	GTCTC	2 cut(s)	91, 165
BstMBI	GATC	1 cut(s)	707
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 172, 734, 743, 806, 815, 933
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	160
BstPAI	GACNNNNGTC	1 cut(s)	582
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	4 cut(s)	49, 159, 300, 755
BstV2I	GAAGAC	2 cut(s)	63, 1031
BstZI	CGGCCG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	1050
BsuRI	GGCC	2 cut(s)	166, 1009
BtgI	CCRYGG	2 cut(s)	23, 487
BtsIMutI	CAGTG	2 cut(s)	383, 650
Cac8I	GCNNGC	2 cut(s)	177, 807
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	1 cut(s)	772
CseI	GACGC	3 cut(s)	68, 292, 814
Csp6I	GTAC	2 cut(s)	220, 868
CviAII	CATG	5 cut(s)	24, 157, 241, 488, 580
CviQI	GTAC	2 cut(s)	220, 868
DdeI	CTNAG	5 cut(s)	344, 592, 634, 724, 994
DpnI	GATC	1 cut(s)	709
DpnII	GATC	1 cut(s)	707
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	198, 1042
EarI	CTCTTC	2 cut(s)	198, 1042
EciI	GGCGGA	1 cut(s)	1092
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	23, 487, 915
Eco24I	GRGCYC	4 cut(s)	32, 261, 274, 345
Eco47I	GGWCC	1 cut(s)	772
Eco52I	CGGCCG	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	3 cut(s)	185, 275, 572
Eco91I	GGTNACC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	3 cut(s)	23, 487, 915
EcoT38I	GRGCYC	4 cut(s)	32, 261, 274, 345
ErhI	CCWWGG	3 cut(s)	23, 487, 915
FaeI	CATG	5 cut(s)	27, 160, 244, 491, 583
FaiI	YATR	9 cut(s)	25, 158, 242, 416, 489, 581, 675, 715, 1119
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	3 cut(s)	105, 290, 590
FatI	CATG	5 cut(s)	23, 156, 240, 487, 579
FauI	CCCGC	1 cut(s)	811
Fnu4HI	GCNGC	4 cut(s)	63, 173, 314, 744
FriOI	GRGCYC	4 cut(s)	32, 261, 274, 345
Fsp4HI	GCNGC	4 cut(s)	63, 173, 314, 744
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	4 cut(s)	63, 173, 314, 744
HaeIII	GGCC	2 cut(s)	166, 1009
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	3 cut(s)	68, 292, 814
HhaI	GCGC	1 cut(s)	780
Hin1I	GRCGYC	2 cut(s)	303, 825
Hin1II	CATG	5 cut(s)	27, 160, 244, 491, 583
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	2 cut(s)	237, 483
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	2 cut(s)	572, 882
Hpy166II	GTNNAC	3 cut(s)	13, 222, 890
Hpy188I	TCNGA	6 cut(s)	256, 364, 949, 981, 997, 1128
Hpy188III	TCNNGA	5 cut(s)	49, 234, 606, 761, 770
Hpy8I	GTNNAC	3 cut(s)	13, 222, 890
Hpy99I	CGWCG	3 cut(s)	299, 302, 830
HpyAV	CCTTC	3 cut(s)	46, 688, 1063
HpyCH4III	ACNGT	2 cut(s)	848, 985
HpyCH4IV	ACGT	2 cut(s)	9, 356
HpyCH4V	TGCA	3 cut(s)	175, 654, 800
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 172, 734, 743, 806, 815, 933
HpyF3I	CTNAG	5 cut(s)	344, 592, 634, 724, 994
HpySE526I	ACGT	2 cut(s)	9, 356
Hsp92I	GRCGYC	2 cut(s)	303, 825
Hsp92II	CATG	5 cut(s)	27, 160, 244, 491, 583
HspAI	GCGC	1 cut(s)	778
Kzo9I	GATC	1 cut(s)	707
LmnI	GCTCC	7 cut(s)	27, 169, 184, 256, 321, 620, 734
Lsp1109I	GCAGC	4 cut(s)	49, 159, 300, 755
LweI	GCATC	4 cut(s)	382, 396, 639, 710
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	9, 356
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	1 cut(s)	709
MboI	GATC	1 cut(s)	707
MboII	GAAGA	8 cut(s)	68, 215, 941, 977, 983, 1036, 1059, 1078
MhlI	GDGCHC	4 cut(s)	32, 261, 274, 345
MluCI	AATT	4 cut(s)	229, 246, 508, 609
MmeI	TCCRAC	2 cut(s)	234, 342
MroXI	GAANNNNTTC	1 cut(s)	698
MspA1I	CMGCKG	2 cut(s)	348, 638
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	7 cut(s)	27, 172, 734, 743, 806, 815, 933
NcoI	CCATGG	2 cut(s)	23, 487
NdeII	GATC	1 cut(s)	707
NlaIII	CATG	5 cut(s)	27, 160, 244, 491, 583
NlaIV	GGNNCC	2 cut(s)	29, 943
NmeAIII	GCCGAG	2 cut(s)	142, 1035
NmuCI	GTSAC	1 cut(s)	560
NspI	RCATGY	1 cut(s)	160
PaeR7I	CTCGAG	1 cut(s)	275
PciI	ACATGT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	232, 291
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	237, 483
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	64, 174, 315, 745
PscI	ACATGT	1 cut(s)	156
PshAI	GACNNNNGTC	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	29, 943
PspPI	GGNCC	1 cut(s)	772
PspXI	VCTCGAGB	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	221, 869
RsaNI	GTAC	2 cut(s)	220, 868
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	4 cut(s)	63, 173, 314, 744
Sau3AI	GATC	1 cut(s)	707
Sau96I	GGNCC	1 cut(s)	772
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	4 cut(s)	32, 261, 274, 345
SfaNI	GCATC	4 cut(s)	382, 396, 639, 710
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	772
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	229, 246, 508, 609
SsiI	CCGC	4 cut(s)	348, 818, 885, 1103
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	3 cut(s)	23, 487, 915
TaaI	ACNGT	2 cut(s)	848, 985
TaiI	ACGT	2 cut(s)	12, 359
TaqI	TCGA	6 cut(s)	214, 276, 321, 404, 448, 1141
TasI	AATT	4 cut(s)	229, 246, 508, 609
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	237, 483
TscAI	CASTG	2 cut(s)	383, 650
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	4 cut(s)	62, 172, 313, 743
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	3 cut(s)	216, 564, 984
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	383, 650
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.