Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21972109 .. 21973220

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATAATTTTTAACGGTTTGGTTGTTTGCATCGTATTTAAGGATCTGGCATTTGATTTGTCCCTTTCTGCACTCCTGGGAGATAATATCTACAACTTTGGAGAGCTGCTTGCGCATCCTATCATTAAGAGCCTTCTAGGGACAAAGGTAGAGTGGCTTTACTATATTCTTCAAGCGTTCAACTCTGGTGATTTAGTTCGGTATCAAGAATTATGTCGTGTACACAATGCTGCTTTGAGAGCACAACCAGCATTAGTTGAAAATGAGAAGAAGCTTTTGGAGAAGATTAACATTCTGTGCTTGATGGAAATTATGTTCAGGTTTGTGTGTTCTAGATTGTCCTTTCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

118

Amino Acids

13.43

Weight (kDa)

6.81

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSD13_N	PF22037	14 - 57	3.3e-16	PSD13 N-terminal repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AclWI	GGATC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	3 cut(s)	173, 181, 260
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	106, 274
AluI	AGCT	2 cut(s)	106, 274
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	106, 230
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	93, 217
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	137, 333
BisI	GCNGC	2 cut(s)	107, 231
BlsI	GCNGC	2 cut(s)	108, 232
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	39, 124
BsaJI	CCNNGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	93, 217
BsgI	GTGCAG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	46, 154
BsmFI	GGGAC	2 cut(s)	46, 154
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 239, 248
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	93, 217
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	221
CviJI	RGCY	4 cut(s)	106, 132, 157, 274
CviKI_1	RGCY	4 cut(s)	106, 132, 157, 274
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	165, 214, 314
FaqI	GGGAC	2 cut(s)	46, 154
Fnu4HI	GCNGC	2 cut(s)	107, 231
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	107, 231
FspBI	CTAG	2 cut(s)	137, 333
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	107, 231
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	272
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	221, 223
Hpy188III	TCNNGA	2 cut(s)	206, 333
Hpy8I	GTNNAC	2 cut(s)	221, 223
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	30, 71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 239, 248
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	32, 62, 89, 171, 261, 304
Lsp1109I	GCAGC	2 cut(s)	93, 217
LweI	GCATC	2 cut(s)	39, 124
MaeI	CTAG	2 cut(s)	137, 333
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	161, 280, 295
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	6, 209, 309
MseI	TTAA	4 cut(s)	12, 39, 126, 288
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	112, 239, 248
NdeII	GATC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	108, 232
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	12, 39, 126, 288
SatI	GCNGC	2 cut(s)	107, 231
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	4 cut(s)	108, 150, 276, 323
SfaNI	GCATC	2 cut(s)	39, 124
Sse9I	AATT	3 cut(s)	6, 209, 309
SspMI	CTAG	2 cut(s)	137, 333
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	3 cut(s)	6, 209, 309
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	4 cut(s)	12, 39, 126, 288
Tru9I	TTAA	4 cut(s)	12, 39, 126, 288
TseI	GCWGC	2 cut(s)	106, 230
XbaI	TCTAGA	1 cut(s)	332
XspI	CTAG	2 cut(s)	137, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.