Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22276762 .. 22276968

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGATATCTCAGGGTGGTTATATTTACGTTTGTGGTGATGCTAAGGGCATGGCCAGGGATGTCCACCGGACCCTGCACACAATCGTGCAGGAGCAGGTATGCAATTGTCACTTACCAAATATGAATGTGACACAAACTAAGACGCCAACCAGGCGGATACAGGACTCTAATTTTACGCAGTACCTGGACACCTATTCCTGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

69

Amino Acids

7.81

Weight (kDa)

8.45

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AciI	CCGC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	53, 149, 183
AleI	CACNNNNGTG	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	53
BciT130I	CCWGG	3 cut(s)	55, 151, 185
BciVI	GTATCC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	151
Bme1390I	CCNGG	3 cut(s)	55, 151, 185
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	3 cut(s)	55, 151, 185
BmsI	GCATC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	55, 151, 185
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	59, 107
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	67, 202
BsnI	GGCC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	3 cut(s)	55, 151, 185
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	9, 42, 138
BstF5I	GGATG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	3 cut(s)	55, 151, 185
BstSCI	CCNGG	3 cut(s)	53, 149, 183
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	1 cut(s)	53
CviKI_1	RGCY	1 cut(s)	53
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	9, 42, 138
EaeI	YGGCCR	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	53, 149, 183
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	21, 50, 100, 122
FatI	CATG	1 cut(s)	48
FokI	GGATG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	67, 202
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	67, 202
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	76, 88, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	9, 42, 138
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	91
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	107, 127
MfeI	CAATTG	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	103, 169
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	67, 202
MspR9I	CCNGG	3 cut(s)	55, 151, 185
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	55, 151, 185
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	107, 127
OliI	CACNNNNGTG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	53, 149, 183
PspGI	CCWGG	3 cut(s)	53, 149, 183
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	55, 151, 185
SetI	ASST	4 cut(s)	30, 99, 186, 194
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	103, 169
SsiI	CCGC	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	53, 149, 183
TaiI	ACGT	1 cut(s)	30
TasI	AATT	2 cut(s)	103, 169
TseFI	GTSAC	2 cut(s)	107, 127
Tsp45I	GTSAC	2 cut(s)	107, 127
TspDTI	ATGAA	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.